Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MIR8065-201ENST00000620577 100 ntBASIC1.26□□□□□ -2.21
CLDN3O15551 AC009033.1-201ENST00000624279 431 ntBASIC1.26□□□□□ -2.21
CLDN3O15551 AC099654.12-201ENST00000639868 649 ntBASIC1.26□□□□□ -2.21
CLDN3O15551 RNA5SP327-201ENST00000362494 101 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNU6-245P-201ENST00000384020 107 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNU6-483P-201ENST00000384088 108 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 SNORD116-1-201ENST00000384335 95 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNU6-780P-201ENST00000391030 104 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 Y_RNA.615-201ENST00000410769 117 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.25□□□□□ -2.21
CLDN3O15551 Z82188.1-201ENST00000436709 154 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 AC079354.2-201ENST00000453523 154 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 MTCO2P30-201ENST00000503662 364 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 Y_RNA.665-201ENST00000516177 98 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RN7SKP88-201ENST00000516847 250 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNU6-1198P-201ENST00000516904 67 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 RNA5SP454-201ENST00000517231 127 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.25□□□□□ -2.21
CLDN3O15551 MIR4742-201ENST00000581069 85 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 MIR4781-201ENST00000585250 76 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 7SK.8-201ENST00000612110 250 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 7SK.11-201ENST00000615477 250 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 7SK.13-201ENST00000622040 250 ntBASIC1.25□□□□□ -2.21
CLDN3O15551 Y_RNA.4-201ENST00000362333 112 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 RNU6-1123P-201ENST00000362347 106 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 Y_RNA.51-201ENST00000362725 102 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 Y_RNA.319-201ENST00000365138 92 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 RNU6-541P-201ENST00000384709 110 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 RNU6-1186P-201ENST00000410429 97 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.24□□□□□ -2.21
CLDN3O15551 AL445305.1-201ENST00000432577 575 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 AL606517.2-201ENST00000442855 241 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 HMGN1P7-201ENST00000491722 313 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 SUMO2P16-201ENST00000519475 264 ntBASIC1.24□□□□□ -2.21
CLDN3O15551 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.24□□□□□ -2.21
CLDN3O15551 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.24□□□□□ -2.21
CLDN3O15551 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.24□□□□□ -2.21
CLDN3O15551 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.24□□□□□ -2.21
CLDN3O15551 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
CLDN3O15551 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CLDN3O15551 SNORD87-201ENST00000364849 89 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 MIR153-2-201ENST00000385225 87 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 MIR618-201ENST00000385287 98 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 RNA5SP504-201ENST00000410676 117 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 AL590632.1-201ENST00000424289 371 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 AC005002.2-201ENST00000438228 269 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.23□□□□□ -2.21
CLDN3O15551 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.23□□□□□ -2.21
CLDN3O15551 AC019235.1-201ENST00000503847 207 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.23□□□□□ -2.21
CLDN3O15551 ACA59.1-201ENST00000515966 143 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 RNU7-40P-201ENST00000516397 64 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 MZT1P2-201ENST00000604387 248 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 AC021506.2-201ENST00000612354 169 ntBASIC1.23□□□□□ -2.21
CLDN3O15551 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.23□□□□□ -2.21
CLDN3O15551 RNU6-1266P-201ENST00000362794 105 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 RNU6-727P-201ENST00000363592 107 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 Y_RNA.164-201ENST00000363709 102 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 RNU6-95P-201ENST00000384697 107 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 MIR517A-201ENST00000385001 87 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 AL591704.2-201ENST00000421658 181 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.22□□□□□ -2.21
CLDN3O15551 TRBVA-201ENST00000498804 316 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 RNU6-58P-201ENST00000517143 103 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.22□□□□□ -2.21
CLDN3O15551 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.22□□□□□ -2.21
CLDN3O15551 TPRKBP2-201ENST00000565969 475 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 MIR4295-201ENST00000585286 85 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.22□□□□□ -2.21
CLDN3O15551 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.22□□□□□ -2.21
CLDN3O15551 AC099654.5-201ENST00000636479 350 ntBASIC1.22□□□□□ -2.21
CLDN3O15551 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CLDN3O15551 RNU6-873P-201ENST00000363833 107 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 SNORD115-8-201ENST00000363856 82 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 SNORD115-32-201ENST00000364079 82 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 SNORD115-38-201ENST00000365037 82 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.21□□□□□ -2.22
CLDN3O15551 RNU6-1031P-201ENST00000384773 107 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
CLDN3O15551 AL356776.1-201ENST00000406574 447 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 MIR1285-1-201ENST00000408593 84 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 RN7SKP200-201ENST00000410564 320 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 RPL37P10-201ENST00000412884 288 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 DAP3P1-201ENST00000441522 278 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 RPS27P1-201ENST00000450552 247 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 MTND1P11-201ENST00000456661 876 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 AC087343.1-201ENST00000477341 475 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 AL133373.1-201ENST00000497098 94 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 NBR2-204ENST00000587322 63 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 AC080078.3-201ENST00000605407 463 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 AC019193.3-201ENST00000609144 554 ntBASIC1.21□□□□□ -2.22
CLDN3O15551 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
CLDN3O15551 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
CLDN3O15551 RNU2-16P-201ENST00000410712 136 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 RPL30P16-201ENST00000419341 429 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 AC245047.3-201ENST00000429428 127 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 MTCO3P18-201ENST00000440206 761 ntBASIC1.2□□□□□ -2.22
CLDN3O15551 HMGN2P26-201ENST00000463169 339 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms