Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 ZNF271P-202ENST00000465539 1970 ntBASIC3.62□□□□□ -1.83
CCDC9Q9Y3X0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.80-201ENST00000362996 102 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 AC117470.1-201ENST00000381974 330 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 SNORA22B-201ENST00000383876 138 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.424-201ENST00000384063 103 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 Y_RNA.485-201ENST00000384395 102 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 MIR512-1-201ENST00000384913 84 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 AL357134.1-201ENST00000445848 426 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 FCF1P4-201ENST00000448326 183 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 NDUFB4P10-201ENST00000452541 359 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 SNORA40.9-201ENST00000515895 93 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 ELOCP31-201ENST00000540463 467 ntBASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-926P-201ENST00000384075 107 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 HMGN2P39-201ENST00000398005 273 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 SRIP1-201ENST00000489235 288 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 RNU7-193P-201ENST00000516723 65 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 AC068657.1-201ENST00000520807 306 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 AC087441.2-201ENST00000529141 262 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.6□□□□□ -1.83
CCDC9Q9Y3X0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC131280.1-202ENST00000624067 4211 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC009487.4-201ENST00000624969 3585 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-23P-201ENST00000363283 107 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 SNORA51.11-201ENST00000384442 131 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-1235P-201ENST00000384559 107 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 MTCYBP6-201ENST00000441810 138 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 MTCO1P44-201ENST00000441935 243 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC016717.1-201ENST00000448918 286 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC112492.4-201ENST00000456549 352 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-498P-201ENST00000459468 107 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AC067942.3-201ENST00000512025 362 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 RNU6-1045P-201ENST00000516321 107 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 MIR3671-201ENST00000580455 88 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 ZNF861P-201ENST00000588126 639 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 AL357075.2-201ENST00000614906 189 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 FO624990.1-201ENST00000636373 85 ntBASIC3.59□□□□□ -1.83
CCDC9Q9Y3X0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC9Q9Y3X0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-1164P-201ENST00000364428 107 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 SNORD14.1-201ENST00000365609 90 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 Y_RNA.498-201ENST00000384460 102 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 MIR518A2-201ENST00000384966 87 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 MTND2P23-201ENST00000422990 651 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-625P-201ENST00000459412 107 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 AC018448.1-201ENST00000552843 316 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 MIR4529-201ENST00000578110 78 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 AC016925.2-201ENST00000605108 242 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 AC090115.4-201ENST00000609970 188 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 snoZ196.1-201ENST00000625269 89 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 AC092593.1-201ENST00000515413 1815 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 AC091812.1-201ENST00000432235 1948 ntBASIC3.58□□□□□ -1.84
CCDC9Q9Y3X0 RNU1-58P-201ENST00000362413 163 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RNA5SP383-201ENST00000362934 120 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 Y_RNA.216-201ENST00000364205 93 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-708P-201ENST00000384217 107 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 MIR548B-201ENST00000385247 97 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RPL21P3-201ENST00000395517 478 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 MRPL42P3-201ENST00000401492 326 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-57P-201ENST00000411348 103 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AL135786.1-201ENST00000415892 214 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 SDAD1P3-201ENST00000427380 333 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RNU1-131P-201ENST00000458943 161 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AC093852.1-201ENST00000503587 266 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 HMGB3P3-201ENST00000510526 400 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-327P-201ENST00000516270 127 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AL390123.1-201ENST00000603216 237 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AL360085.1-201ENST00000604713 532 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AL121655.1-201ENST00000605811 308 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 AL590240.4-201ENST00000616908 390 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 U6.92-201ENST00000636464 89 ntBASIC3.57□□□□□ -1.84
CCDC9Q9Y3X0 SNORA46-201ENST00000384762 135 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 RN7SKP223-201ENST00000410582 62 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 BX510359.4-201ENST00000423750 193 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 TOMM22P2-201ENST00000430735 237 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 AC040926.1-201ENST00000530195 238 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 AC009127.3-201ENST00000570531 403 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 AC245060.5-201ENST00000610778 3293 ntBASIC3.56□□□□□ -1.84
CCDC9Q9Y3X0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 RNU4-50P-201ENST00000364361 141 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-1264P-201ENST00000383891 107 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 HMGN2P3-201ENST00000433603 273 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 HMGN2P5-201ENST00000436882 273 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms