Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RNU6-1198P-201ENST00000516904 67 ntBASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 AC090049.2-201ENST00000550377 109 ntBASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 MIR3973-201ENST00000579824 107 ntBASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 AC087683.1-201ENST00000591187 441 ntBASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 MIR6857-201ENST00000613267 93 ntBASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 FER-210ENST00000628534 558 ntTSL 5 BASIC0.72□□□□□ -2.29
RHBDD3Q9Y3P4 RNU6-1266P-201ENST00000362794 105 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNY1P10-201ENST00000363268 113 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 Y_RNA.124-201ENST00000363339 93 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-1317P-201ENST00000364582 104 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-784P-201ENST00000384330 106 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AL451046.2-201ENST00000403074 277 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AL606923.1-201ENST00000406616 190 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 MTND2P18-201ENST00000419962 1030 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 MTCYBP8-201ENST00000422855 651 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 Y_RNA.638-201ENST00000459374 113 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 BET1P1-201ENST00000482276 359 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AF186996.7-201ENST00000492781 209 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 HMGB1P29-201ENST00000505659 499 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-113P-201ENST00000516653 101 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-430P-201ENST00000517078 107 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 MTCO2P4-201ENST00000517968 247 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AC064836.2-201ENST00000609491 462 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 MIR8076-201ENST00000611401 83 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AL050303.3-201ENST00000613704 284 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AC103705.1-201ENST00000619013 241 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 U6.73-201ENST00000619194 103 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 AC007494.3-201ENST00000624660 743 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 OR5AK4P-201ENST00000635912 903 ntBASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.71□□□□□ -2.3
RHBDD3Q9Y3P4 MIR100-201ENST00000385259 80 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 MTND1P35-201ENST00000526739 508 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 APOOP3-201ENST00000536787 586 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 MIR4424-201ENST00000585257 86 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 RMST_3.1-201ENST00000611651 109 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 AC106800.4-201ENST00000614905 153 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 MIR6767-201ENST00000637302 66 ntBASIC0.7□□□□□ -2.3
RHBDD3Q9Y3P4 MIR96-201ENST00000362288 78 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 U3.8-201ENST00000363675 217 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 SNORD115-8-201ENST00000363856 82 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 SNORD115-38-201ENST00000365037 82 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 SNORA72.3-201ENST00000365074 132 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AF228730.1-201ENST00000397972 663 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-1186P-201ENST00000410429 97 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 RPS3AP1-201ENST00000413190 320 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 CCDC34P1-201ENST00000507441 517 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 RNU7-128P-201ENST00000517247 62 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 AC106754.2-201ENST00000623006 233 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 ZNF204P-201ENST00000416749 2397 ntBASIC0.69□□□□□ -2.3
RHBDD3Q9Y3P4 MIR373-201ENST00000362273 69 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 Y_RNA.159-201ENST00000363674 87 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 SNORA2.2-201ENST00000365473 135 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 SNORD41-201ENST00000386967 70 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 MIR942-201ENST00000401111 86 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AL606490.4-201ENST00000423117 127 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AL359672.1-201ENST00000442302 409 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 RNA5SP102-201ENST00000516865 106 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 RNU1-117P-201ENST00000517041 158 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 MTND1P5-201ENST00000517906 940 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AL603755.1-201ENST00000619504 163 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 AC008163.1-202ENST00000636004 2889 ntBASIC0.68□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-933P-201ENST00000384424 107 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 MIR562-201ENST00000384894 95 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 SNORA26.8-201ENST00000391306 124 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 MIR1185-2-201ENST00000408687 86 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 AC005002.2-201ENST00000438228 269 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 MTCO3P18-201ENST00000440206 761 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 MTCO2P7-201ENST00000446518 666 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 TPTE2P5-203ENST00000458118 728 ntBASIC0.67□□□□□ -2.3
RHBDD3Q9Y3P4 MTCO1P29-201ENST00000496868 288 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 192 ms