Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-1019P-201ENST00000364424 107 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 RNU6-793P-201ENST00000384233 104 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 Y_RNA.473-201ENST00000384333 102 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 MT-TL1-201ENST00000386347 75 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 U8.13-201ENST00000390842 128 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
VPS28Q9UK41 AL117342.1-201ENST00000404861 406 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 CST2P1-201ENST00000425770 87 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.95□□□□□ -2.1
VPS28Q9UK41 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 Y_RNA.670-201ENST00000516255 105 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 SNORA44.1-201ENST00000517031 108 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 AL355802.3-201ENST00000607571 545 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 AC006001.4-201ENST00000622243 395 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.95□□□□□ -2.1
VPS28Q9UK41 snoU2-30.2-201ENST00000362805 70 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 RNU6-296P-201ENST00000384608 107 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 MIR520A-201ENST00000384862 85 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 EBAG9P1-201ENST00000418955 543 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 AC007098.1-201ENST00000420122 367 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 MTND3P23-201ENST00000431980 347 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.94□□□□□ -2.1
VPS28Q9UK41 RNU6-1114P-201ENST00000516022 107 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 RNA5SP182-201ENST00000516064 82 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.94□□□□□ -2.1
VPS28Q9UK41 AC126177.8-201ENST00000618339 1015 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 MIR338-201ENST00000636369 67 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.94□□□□□ -2.1
VPS28Q9UK41 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
VPS28Q9UK41 AC010615.1-201ENST00000594254 1764 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS28Q9UK41 Y_RNA.88-201ENST00000363029 99 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 U3.8-201ENST00000363675 217 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 Y_RNA.179-201ENST00000363844 90 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 Y_RNA.184-201ENST00000363884 108 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR10B-201ENST00000385011 110 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 RNU6-700P-201ENST00000391043 107 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 SNORA40.18-201ENST00000391200 128 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 RNU1-139P-201ENST00000391307 165 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC008134.1-201ENST00000420943 193 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.93□□□□□ -2.1
VPS28Q9UK41 USP9YP16-201ENST00000430287 407 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC069257.2-201ENST00000441819 155 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 NDUFB4P10-201ENST00000452541 359 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 USP9YP23-201ENST00000455085 407 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC091179.3-201ENST00000474761 144 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC093303.1-201ENST00000514549 295 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 RNU6-295P-201ENST00000516901 104 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS28Q9UK41 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS28Q9UK41 AL121579.1-201ENST00000555129 305 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR3198-2-201ENST00000577868 80 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR5701-3-201ENST00000578890 82 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR5695-201ENST00000579717 85 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR5701-1-201ENST00000585138 82 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC005014.2-201ENST00000607795 599 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC009229.3-201ENST00000608056 282 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIR5701-2-201ENST00000615634 82 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 PISRT1.1-201ENST00000616930 107 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS28Q9UK41 AC099654.5-201ENST00000636479 350 ntBASIC1.93□□□□□ -2.1
VPS28Q9UK41 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
VPS28Q9UK41 RNU6-727P-201ENST00000363592 107 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 SNORA72.2-201ENST00000365028 127 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 MIR1253-201ENST00000408273 105 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 AC245047.4-201ENST00000433189 144 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS28Q9UK41 RNU6-221P-201ENST00000459541 99 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 AC116353.2-201ENST00000505332 712 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS28Q9UK41 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS28Q9UK41 AC010999.1-201ENST00000611856 324 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 MIR6845-201ENST00000613182 61 ntBASIC1.92□□□□□ -2.1
VPS28Q9UK41 SNORD87-201ENST00000364849 89 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 Y_RNA.415-201ENST00000384012 112 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 MIR515-2-201ENST00000384883 83 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 MIR515-1-201ENST00000384884 83 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 MIR30A-201ENST00000385092 71 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 RNU2-7P-201ENST00000410794 178 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 MTCYBP10-201ENST00000424905 650 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 HMGN2P34-201ENST00000437647 269 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC003989.2-201ENST00000440224 169 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS28Q9UK41 MTND3P10-201ENST00000450967 341 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 RPL23AP63-201ENST00000498752 471 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 HMGN1P13-201ENST00000505795 138 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC103851.1-201ENST00000506833 274 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC025465.3-201ENST00000510570 311 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC008834.1-201ENST00000511612 175 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 RNU6-307P-201ENST00000516743 106 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC084364.2-201ENST00000546924 395 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.91□□□□□ -2.1
VPS28Q9UK41 AC005899.2-201ENST00000584353 90 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.91□□□□□ -2.1
VPS28Q9UK41 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.9□□□□□ -2.1
VPS28Q9UK41 RNY1P16-201ENST00000363063 111 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms