Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-1178P-201ENST00000516674 107 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.24□□□□□ -2.37
SCN3AQ9NY46 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 MIR6718-201ENST00000616153 80 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 AC022418.1-201ENST00000624118 445 ntBASIC0.24□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.294-201ENST00000364916 102 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.367-201ENST00000365544 101 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RNU6-827P-201ENST00000365553 106 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.476-201ENST00000384347 108 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC010975.2-201ENST00000427781 588 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 MTCO2P18-201ENST00000457151 658 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RPS29P15-201ENST00000458329 171 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RNU6-221P-201ENST00000459541 99 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AL163973.1-201ENST00000484753 577 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC113410.1-201ENST00000505029 247 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC097462.1-201ENST00000514125 324 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.672-201ENST00000516289 104 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AP001372.4-201ENST00000524889 472 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AP003327.1-201ENST00000529684 127 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 MIR4999-201ENST00000585029 91 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC004223.2-201ENST00000590309 544 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC004832.4-201ENST00000608952 331 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AL360219.1-201ENST00000610230 366 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC139792.3-201ENST00000623525 224 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 SEPT14P19-203ENST00000633205 211 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 MIR586-201ENST00000385035 97 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 Y_RNA.598-201ENST00000410480 95 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RNA5SP504-201ENST00000410676 117 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RNU6-57P-201ENST00000411348 103 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 U7.7-201ENST00000459276 60 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 RNU7-57P-201ENST00000459540 60 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 LRRC34P2-201ENST00000514850 553 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 Vault.3-201ENST00000516676 95 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC025627.3-201ENST00000582078 182 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC080078.2-201ENST00000603766 501 ntBASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.23□□□□□ -2.37
SCN3AQ9NY46 AF228730.1-201ENST00000397972 663 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RPS26P5-201ENST00000418544 335 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 MTCO2P23-201ENST00000425216 680 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RPL31P35-201ENST00000431058 377 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AC116562.3-201ENST00000506136 177 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RNU6-917P-201ENST00000516294 104 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RNU6-344P-201ENST00000516635 111 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RNA5SP454-201ENST00000517231 127 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AC068587.5-201ENST00000528506 175 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AC007014.2-201ENST00000615581 479 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 AC134026.1-201ENST00000623249 2239 ntBASIC0.22□□□□□ -2.37
SCN3AQ9NY46 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
SCN3AQ9NY46 RNU6-931P-201ENST00000363850 107 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 RNU6-331P-201ENST00000384724 107 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AL355143.1-201ENST00000407101 841 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC012306.1-201ENST00000423267 114 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 MTND1P20-201ENST00000430341 950 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC000111.3-201ENST00000433478 193 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 SNORD42A-201ENST00000459584 64 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC091805.2-201ENST00000603848 235 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AL158050.2-201ENST00000605336 568 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC002044.1-201ENST00000606707 158 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 MIR7844-201ENST00000616161 122 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 SNORA43.4-201ENST00000629559 138 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 MIRLET7C-201ENST00000362160 84 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 Y_RNA.458-201ENST00000384240 102 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 RNU6-424P-201ENST00000384367 105 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 RNU6-440P-201ENST00000390882 105 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC106883.1-201ENST00000418805 562 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.21□□□□□ -2.38
SCN3AQ9NY46 NFU1P2-201ENST00000448700 469 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AL360085.1-201ENST00000604713 532 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AC138749.5-201ENST00000611461 208 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 AL391903.3-201ENST00000612158 163 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.21□□□□□ -2.38
SCN3AQ9NY46 Y_RNA.159-201ENST00000363674 87 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU6-266P-201ENST00000364225 107 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU4-68P-201ENST00000364314 141 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU6-1335P-201ENST00000365426 107 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 RNU6-945P-201ENST00000383947 107 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AL031274.1-201ENST00000450334 232 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
SCN3AQ9NY46 ELOCP32-201ENST00000548625 324 ntBASIC0.2□□□□□ -2.38
SCN3AQ9NY46 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms