Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
MKS1Q9NXB0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
MKS1Q9NXB0 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MKS1Q9NXB0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 SNORD46.1-201ENST00000364139 104 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 SNORA72.2-201ENST00000365028 127 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 RNU6-463P-201ENST00000384340 107 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 RNU1-148P-201ENST00000384472 162 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 IPO7P1-201ENST00000442031 636 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 AC016717.1-201ENST00000448918 286 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 AC010531.2-201ENST00000465012 153 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MIR3670-2-201ENST00000582974 65 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MIR3670-1-201ENST00000584160 65 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MIR3670-3-201ENST00000584855 65 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 ZNF861P-201ENST00000588126 639 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 AC011373.1-201ENST00000607270 237 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 MIR3670-4-201ENST00000612260 65 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 7SK.10-201ENST00000621414 298 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 snoZ196.1-201ENST00000625269 89 ntBASIC2.76□□□□□ -1.97
MKS1Q9NXB0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.76□□□□□ -1.97
MKS1Q9NXB0 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
MKS1Q9NXB0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.101-201ENST00000363154 102 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 SNORD113-8-201ENST00000363497 74 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 RNU6-454P-201ENST00000364292 107 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 RNA5SP120-201ENST00000410900 112 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 EDDM3CP-201ENST00000415977 425 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 MTCO1P44-201ENST00000441935 243 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 RN7SL807P-201ENST00000470923 297 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 RNU2-34P-201ENST00000516534 121 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 RNU7-110P-201ENST00000516891 62 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 MIR4503-201ENST00000582187 83 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 AC022441.3-201ENST00000605737 136 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 AL162274.2-201ENST00000614406 332 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 AC009487.4-201ENST00000624969 3585 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 AC131280.1-202ENST00000624067 4211 ntBASIC2.75□□□□□ -1.97
MKS1Q9NXB0 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
MKS1Q9NXB0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 MIR340-201ENST00000362125 95 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 snoU2_19.2-201ENST00000363024 80 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 SNORA25.6-201ENST00000364121 118 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 MIR1262-201ENST00000408276 93 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 AC087441.2-201ENST00000529141 262 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 AC004486.1-201ENST00000546846 233 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 AC121758.2-201ENST00000553271 193 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 SNORD113-5-201ENST00000607261 78 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.74□□□□□ -1.97
MKS1Q9NXB0 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.74□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.99-201ENST00000363138 105 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNA5SP387-201ENST00000364226 106 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.446-201ENST00000384178 104 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-1235P-201ENST00000384559 107 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-21P-201ENST00000384710 107 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 MIR215-201ENST00000384858 110 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.581-201ENST00000391017 97 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU4-30P-201ENST00000410245 143 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU2-54P-201ENST00000410299 190 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.602-201ENST00000410535 92 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-57P-201ENST00000411348 103 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AL357134.1-201ENST00000445848 426 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-498P-201ENST00000459468 107 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-221P-201ENST00000459541 99 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RPS29P26-201ENST00000477483 171 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RN7SL504P-201ENST00000494496 287 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 SEPT14P8-201ENST00000508026 178 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU6-496P-201ENST00000516145 99 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AL161670.1-201ENST00000554348 137 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AC026271.5-201ENST00000577873 130 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 AC013412.1-201ENST00000610687 192 ntBASIC2.73□□□□□ -1.97
MKS1Q9NXB0 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
MKS1Q9NXB0 RNU1-91P-201ENST00000364746 163 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 Y_RNA.376-201ENST00000365638 108 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 RNU6-574P-201ENST00000384265 107 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 SNORD14D-201ENST00000384390 87 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 RNU6-1199P-201ENST00000411249 104 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 RPL23AP36-201ENST00000413895 458 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 AC009963.1-201ENST00000417265 157 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 AC139712.2-201ENST00000424302 339 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.72□□□□□ -1.97
MKS1Q9NXB0 RNU6-966P-201ENST00000516479 104 ntBASIC2.72□□□□□ -1.97
MKS1Q9NXB0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms