Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.682-201ENST00000516457 100 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AC027288.2-201ENST00000553028 243 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AC110588.1-201ENST00000559699 137 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 MIR3198-2-201ENST00000577868 80 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AC069114.2-201ENST00000604699 304 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AL078596.1-201ENST00000624856 447 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 AC008873.1-201ENST00000625051 138 ntBASIC1.59□□□□□ -2.15
DDX28Q9NUL7 ZNF299P-201ENST00000406845 1804 ntBASIC1.59□□□□□ -2.16
DDX28Q9NUL7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 WWP1P1-201ENST00000466609 2769 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RNU6-595P-201ENST00000363944 107 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RNU1-96P-201ENST00000364163 162 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RNU6-1019P-201ENST00000364424 107 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.533-201ENST00000384596 114 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RNU6-296P-201ENST00000384608 107 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.595-201ENST00000410403 105 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 MTND3P8-201ENST00000412909 339 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AC003989.2-201ENST00000440224 169 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AC069439.1-201ENST00000494739 167 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RPS29P11-201ENST00000496507 171 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 MTND5P5-201ENST00000503764 376 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RNU6-1053P-201ENST00000515930 101 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 SNORA25.14-201ENST00000516481 132 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 SNORA25.15-201ENST00000516487 89 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AL590705.4-201ENST00000532209 134 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 MIR4742-201ENST00000581069 85 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AC060780.3-201ENST00000589464 80 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 SNORD11B-201ENST00000607707 90 ntBASIC1.58□□□□□ -2.16
DDX28Q9NUL7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.58□□□□□ -2.16
DDX28Q9NUL7 AC010615.1-201ENST00000594254 1764 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNU6-280P-201ENST00000364145 104 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 SNORD48-201ENST00000364953 64 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 MIR520A-201ENST00000384862 85 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 MIR30A-201ENST00000385092 71 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNA5SP213-201ENST00000391031 106 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNU6-159P-201ENST00000391080 106 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNU6-955P-201ENST00000410497 104 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.57□□□□□ -2.16
DDX28Q9NUL7 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.57□□□□□ -2.16
DDX28Q9NUL7 EBAG9P1-201ENST00000418955 543 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 CST2P1-201ENST00000425770 87 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNU6-1146P-201ENST00000516282 102 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 AC104581.2-201ENST00000572227 430 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 AC011712.1-201ENST00000588959 234 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 MIR338-201ENST00000636369 67 ntBASIC1.57□□□□□ -2.16
DDX28Q9NUL7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.57□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.72-201ENST00000362894 103 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU6-1059P-201ENST00000363752 98 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU5F-3P-201ENST00000363767 117 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU6-873P-201ENST00000363833 107 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU6-842P-201ENST00000384269 107 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC074085.1-201ENST00000413598 418 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 CYCSP49-201ENST00000420810 319 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC245047.4-201ENST00000433189 144 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.56□□□□□ -2.16
DDX28Q9NUL7 RNU1-117P-201ENST00000517041 158 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC134698.4-201ENST00000523451 826 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC084364.2-201ENST00000546924 395 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC016925.2-201ENST00000605108 242 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC092794.1-201ENST00000612734 582 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 MIR8074-201ENST00000615081 81 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 U6atac.1-201ENST00000616025 117 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC126177.8-201ENST00000618339 1015 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 snoZ196.1-201ENST00000625269 89 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AL133216.2-202ENST00000634512 349 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 AC068205.3-201ENST00000636385 468 ntBASIC1.56□□□□□ -2.16
DDX28Q9NUL7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.4-201ENST00000362333 112 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 RNU6-593P-201ENST00000364716 112 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.405-201ENST00000383979 100 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.451-201ENST00000384200 100 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.524-201ENST00000384564 100 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.561-201ENST00000384694 100 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 MIR9-3-201ENST00000385084 90 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
DDX28Q9NUL7 RNU6-360P-201ENST00000390944 104 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 FGF7P8-201ENST00000402994 292 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 MIR548K-201ENST00000408406 116 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 RNA5SP504-201ENST00000410676 117 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 RPL30P16-201ENST00000419341 429 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 AC007098.1-201ENST00000420122 367 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 USMG5P1-201ENST00000425964 177 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 MTCO3P29-201ENST00000432119 779 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.55□□□□□ -2.16
DDX28Q9NUL7 HMGN1P13-201ENST00000505795 138 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 AC018710.1-201ENST00000506509 158 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 151 ms