Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR4422-201ENST00000581938 83 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC019193.3-201ENST00000609144 554 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC084782.3-201ENST00000612282 578 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC137590.2-201ENST00000619709 240 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC073869.6-201ENST00000640656 341 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 AC010615.1-201ENST00000594254 1764 ntBASIC1.23□□□□□ -2.21
CCDC54Q8NEL0 RNA5SP190-201ENST00000365222 118 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 Y_RNA.453-201ENST00000384223 109 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 MIR194-1-201ENST00000384892 85 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 SNORA12.1-201ENST00000390873 148 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 RNA5SP467-201ENST00000391274 118 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 RNU6-373P-201ENST00000411247 98 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AL354695.1-201ENST00000427935 228 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 MTND1P4-201ENST00000435196 415 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 RNU7-57P-201ENST00000459540 60 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 RNU6-329P-201ENST00000459618 107 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AC116337.1-201ENST00000509680 687 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 RNU7-128P-201ENST00000517247 62 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 FRG2DP-202ENST00000566967 323 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 AP003465.2-201ENST00000602571 373 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 MIR8074-201ENST00000615081 81 ntBASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC54Q8NEL0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC245060.5-201ENST00000610778 3293 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU6-874P-201ENST00000362390 105 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 snoU2-30.2-201ENST00000362805 70 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.157-201ENST00000363638 102 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU6-271P-201ENST00000363858 105 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU6-1019P-201ENST00000364424 107 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU4-9P-201ENST00000364951 139 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.415-201ENST00000384012 112 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 SNORD26-201ENST00000384147 75 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU6-57P-201ENST00000411348 103 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RPS27P1-201ENST00000450552 247 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC091179.3-201ENST00000474761 144 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 MTND5P5-201ENST00000503764 376 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU6-344P-201ENST00000516635 111 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 RNU1-117P-201ENST00000517041 158 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC025647.1-201ENST00000517879 253 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 MIR4753-201ENST00000585119 83 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC069114.2-201ENST00000604699 304 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 AC006001.4-201ENST00000622243 395 ntBASIC1.21□□□□□ -2.22
CCDC54Q8NEL0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU6-595P-201ENST00000363944 107 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.319-201ENST00000365138 92 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU6-596P-201ENST00000365395 98 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU6-417P-201ENST00000384712 107 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 MIR520A-201ENST00000384862 85 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 MIR10B-201ENST00000385011 110 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU6-159P-201ENST00000391080 106 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 MIR1323-201ENST00000408090 73 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AC073910.1-201ENST00000445047 438 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 SNORD5.1-201ENST00000458800 75 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AP000870.1-201ENST00000472927 406 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU6-948P-201ENST00000516374 107 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNA5SP61-201ENST00000516453 100 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 RNU2-34P-201ENST00000516534 121 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 CBX3P8-201ENST00000532412 525 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AC018638.8-201ENST00000588755 281 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 AC002553.4-201ENST00000616896 331 ntBASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC54Q8NEL0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNU6-222P-201ENST00000362438 107 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.86-201ENST00000363020 111 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNU6-727P-201ENST00000363592 107 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.339-201ENST00000365325 102 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.405-201ENST00000383979 100 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.451-201ENST00000384200 100 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.524-201ENST00000384564 100 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.561-201ENST00000384694 100 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNU1-78P-201ENST00000391248 165 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AL356776.1-201ENST00000406574 447 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNA5SP118-201ENST00000410385 109 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 CST2P1-201ENST00000425770 87 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC005002.2-201ENST00000438228 269 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 snoU13.9-201ENST00000458927 103 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 RNU6-221P-201ENST00000459541 99 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC099513.1-201ENST00000490423 301 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC025465.3-201ENST00000510570 311 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 AC026782.1-201ENST00000512952 449 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 Y_RNA.682-201ENST00000516457 100 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 SNORA25.14-201ENST00000516481 132 ntBASIC1.19□□□□□ -2.22
CCDC54Q8NEL0 MZT1P2-201ENST00000604387 248 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms