Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RNU1-142P-201ENST00000516682 145 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AC025647.1-201ENST00000517879 253 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AC106038.2-201ENST00000520706 568 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 MTND2P32-201ENST00000521584 1038 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AL137161.1-201ENST00000532231 390 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 MIR4711-201ENST00000578274 70 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AC011458.1-201ENST00000604034 617 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AL513423.1-201ENST00000621695 132 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 AC106754.2-201ENST00000623006 233 ntBASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
CCDC112Q8NEF3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU6-227P-201ENST00000362865 103 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU6-969P-201ENST00000383900 105 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU6-297P-201ENST00000384636 107 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 MIR200A-201ENST00000384875 90 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 MIR653-201ENST00000385279 96 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 SNORD41-201ENST00000386967 70 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU6-440P-201ENST00000390882 105 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC005002.2-201ENST00000438228 269 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 BET1P1-201ENST00000482276 359 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 HMGB1P29-201ENST00000505659 499 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC010493.1-201ENST00000513479 292 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU6-1129P-201ENST00000515964 104 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 RNU7-128P-201ENST00000517247 62 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC025423.5-201ENST00000550230 219 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 MIR5583-1-201ENST00000580941 59 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC146944.4-201ENST00000602697 718 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 AC080078.2-201ENST00000603766 501 ntBASIC0.55□□□□□ -2.32
CCDC112Q8NEF3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 RNU6-456P-201ENST00000384493 107 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 RNU6-903P-201ENST00000391270 109 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 RNA5SP494-201ENST00000410653 129 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC092628.1-201ENST00000436250 252 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 MTCO3P18-201ENST00000440206 761 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 HSFY5P-201ENST00000453726 309 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 MTND2P39-201ENST00000457230 764 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC022364.2-201ENST00000457963 554 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 COX6CP6-201ENST00000490840 228 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 RNU6-496P-201ENST00000516145 99 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC090616.2-202ENST00000584248 222 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AL512605.2-201ENST00000592972 256 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC245014.2-201ENST00000603689 287 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC246785.4-201ENST00000605374 287 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AL359075.3-201ENST00000613288 217 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 AC009161.2-201ENST00000624626 138 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 snoZ196.1-201ENST00000625269 89 ntBASIC0.54□□□□□ -2.32
CCDC112Q8NEF3 RNU6-181P-201ENST00000363225 107 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNA5SP325-201ENST00000363756 130 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU6-1286P-201ENST00000383871 107 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 Y_RNA.560-201ENST00000384689 102 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 MIR660-201ENST00000385235 97 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 MRPL42P3-201ENST00000401492 326 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AL031577.2-201ENST00000404133 280 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 CYCSP46-201ENST00000423569 204 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU7-138P-201ENST00000459479 64 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU6-221P-201ENST00000459541 99 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU6-1037P-201ENST00000459571 107 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 SNORD42A-201ENST00000459584 64 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AC025465.4-201ENST00000513422 638 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU6-445P-201ENST00000516949 107 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 SCARNA1-201ENST00000517138 166 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 MRPS36P4-201ENST00000534436 298 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AC004584.2-201ENST00000570407 410 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AC104465.1-201ENST00000611365 139 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 U2.17-201ENST00000611454 95 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 AC008873.1-201ENST00000625051 138 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 SNORD3E-202ENST00000627253 216 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 MTND4P5-201ENST00000435821 1374 ntBASIC0.53□□□□□ -2.32
CCDC112Q8NEF3 RNU4-76P-201ENST00000364509 141 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 RNU6-1240P-201ENST00000365155 104 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 SNORA80D-201ENST00000384488 135 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 RNU6-248P-201ENST00000410720 107 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 CDK8P2-201ENST00000415020 547 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 BX295541.1-201ENST00000417774 250 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC245047.3-201ENST00000429428 127 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC074290.1-201ENST00000448883 135 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 RNU6-229P-201ENST00000516614 102 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AP002963.1-201ENST00000530590 184 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC025449.1-201ENST00000603896 529 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 AC073349.3-201ENST00000617616 186 ntBASIC0.52□□□□□ -2.33
CCDC112Q8NEF3 RNU4-12P-201ENST00000365233 139 ntBASIC0.51□□□□□ -2.33
CCDC112Q8NEF3 MIR942-201ENST00000401111 86 ntBASIC0.51□□□□□ -2.33
CCDC112Q8NEF3 AL034345.1-201ENST00000407768 123 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 295.2 ms