Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 RNU2-7P-201ENST00000410794 178 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AC003989.2-201ENST00000440224 169 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 MTND4LP16-201ENST00000440828 295 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AC069257.2-201ENST00000441819 155 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AC007395.1-201ENST00000451333 677 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 RPL26P26-201ENST00000480251 434 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 MTCO1P29-201ENST00000496868 288 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AK3P2-201ENST00000507976 429 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 CYP4A27P-201ENST00000567218 190 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 FGF7P1-201ENST00000582820 288 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AP001836.1-201ENST00000604675 523 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AC016727.1-205ENST00000605437 569 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 PCGEM1.1-201ENST00000613431 131 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AL121890.5-201ENST00000620848 304 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AC084768.2-201ENST00000622736 221 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 AL008636.1-201ENST00000625038 1018 ntBASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.54□□□□□ -2.16
ZNF540Q8NDQ6 SNORD50.1-201ENST00000362987 71 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 RNU4-73P-201ENST00000363164 141 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 MIR517A-201ENST00000385001 87 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AP000275.1-201ENST00000411943 390 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AC022028.1-201ENST00000412054 408 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 CYCSP49-201ENST00000420810 319 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AF228730.4-201ENST00000421457 183 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 USP9YP30-201ENST00000430729 455 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 ATP5J2P3-201ENST00000451550 258 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AC079354.2-201ENST00000453523 154 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 SNORD5.1-201ENST00000458800 75 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 ICE2P2-201ENST00000483823 2787 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 RPS29P11-201ENST00000496507 171 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-612P-201ENST00000516909 102 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 RNU6-1213P-201ENST00000517075 94 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 APOOP3-201ENST00000536787 586 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 MIR3976-201ENST00000606807 139 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AC104985.2-201ENST00000620598 500 ntBASIC1.53□□□□□ -2.16
ZNF540Q8NDQ6 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.53□□□□□ -2.17
ZNF540Q8NDQ6 RNA5SP190-201ENST00000365222 118 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.404-201ENST00000383978 102 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1013P-201ENST00000384180 107 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-174P-201ENST00000410406 106 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RNU7-14P-201ENST00000459331 62 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1037P-201ENST00000459571 107 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 ATP5EP1-201ENST00000510257 156 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.670-201ENST00000516255 105 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1016P-201ENST00000516689 94 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AL355375.2-201ENST00000574825 175 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 SNORA77B-201ENST00000578179 125 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC078795.3-201ENST00000602913 472 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC018462.2-201ENST00000605375 395 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC025253.1-201ENST00000613623 543 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC083806.3-201ENST00000614016 455 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 MIR1302-1-201ENST00000637932 143 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AC010615.1-201ENST00000594254 1764 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 AL159152.1-201ENST00000635019 2587 ntBASIC1.52□□□□□ -2.17
ZNF540Q8NDQ6 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.58-201ENST00000362807 102 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.154-201ENST00000363624 102 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-271P-201ENST00000363858 105 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNY3P1-201ENST00000365085 102 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNY3-201ENST00000365484 102 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.394-201ENST00000383942 103 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 SNORA36A-201ENST00000384221 132 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.490-201ENST00000384413 102 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1106P-201ENST00000390845 107 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1304P-201ENST00000411374 106 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC074085.1-201ENST00000413598 418 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MTND3P9-201ENST00000429526 346 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC016925.1-201ENST00000458303 298 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC099513.1-201ENST00000490423 301 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MTND3P22-201ENST00000510932 243 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC108729.3-201ENST00000513484 108 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MIR4255-201ENST00000579351 72 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MIR6128-201ENST00000615528 109 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC084781.2-201ENST00000615568 161 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 MIR8063-201ENST00000621930 81 ntBASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
ZNF540Q8NDQ6 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU4-79P-201ENST00000362764 141 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-227P-201ENST00000362865 103 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.132-201ENST00000363421 102 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1188P-201ENST00000363795 107 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1019P-201ENST00000364424 107 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.356-201ENST00000365475 113 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-784P-201ENST00000384330 106 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 MIR9-3-201ENST00000385084 90 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms