Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC108706.1-201ENST00000611053 297 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 AC091932.3-201ENST00000624223 323 ntBASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
USHBP1Q8N6Y0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 Y_RNA.441-201ENST00000384123 112 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-19P-201ENST00000384718 107 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RNU2-54P-201ENST00000410299 190 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RNA5SP38-201ENST00000410750 119 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 IFNA11P-201ENST00000446352 526 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RPL30P14-201ENST00000482744 348 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RNU1-41P-201ENST00000516161 162 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RNU1-48P-201ENST00000516400 162 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 SNORD19.2-201ENST00000516978 73 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 MIR3674-201ENST00000636576 68 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 GABRG2-229ENST00000641017 3628 ntBASIC3.56□□□□□ -1.84
USHBP1Q8N6Y0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-653P-201ENST00000363074 106 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 Y_RNA.398-201ENST00000383952 99 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 CBX3P9-201ENST00000402326 552 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 AC023141.4-201ENST00000412031 328 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 PTGES3P4-201ENST00000426243 356 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 AL441985.1-201ENST00000457727 251 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 RN7SKP43-201ENST00000516173 320 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 MIR3145-201ENST00000580727 82 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 AC091152.3-201ENST00000604227 325 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-91P-201ENST00000607774 107 ntBASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.55□□□□□ -1.84
USHBP1Q8N6Y0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 RNA5SP289-201ENST00000362332 137 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-727P-201ENST00000363592 107 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-748P-201ENST00000384648 107 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 AC096725.1-201ENST00000514266 313 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 AC109329.2-201ENST00000519658 482 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 MIR4474-201ENST00000579189 78 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 AC006380.1-201ENST00000603598 186 ntBASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.54□□□□□ -1.84
USHBP1Q8N6Y0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 MIR148B-201ENST00000362252 99 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 RNU6-529P-201ENST00000363383 104 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AL357139.1-201ENST00000407792 426 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 RPS15AP5-201ENST00000436276 388 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AL714022.1-201ENST00000439897 151 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AC103975.1-201ENST00000482506 483 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 HMGB3P3-201ENST00000510526 400 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 DEFB117-201ENST00000602356 141 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AL133393.1-201ENST00000603277 287 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AC090115.4-201ENST00000609970 188 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.53□□□□□ -1.84
USHBP1Q8N6Y0 AC093831.2-201ENST00000624393 3427 ntBASIC3.53□□□□□ -1.85
USHBP1Q8N6Y0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-81P-201ENST00000365608 104 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 AC096649.2-201ENST00000416186 393 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 AC140059.1-201ENST00000489238 361 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 AC245166.1-201ENST00000521012 253 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 AC104984.5-201ENST00000586878 94 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 RPS15AP11-201ENST00000594193 385 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.52□□□□□ -1.85
USHBP1Q8N6Y0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AC007256.1-201ENST00000392253 2765 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-1010P-201ENST00000362757 107 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-1272P-201ENST00000362776 107 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 SNORD114-30-201ENST00000364448 72 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.571-201ENST00000384753 98 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 Y_RNA.580-201ENST00000391004 95 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL133475.1-201ENST00000404414 305 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 RNU6-1077P-201ENST00000410506 102 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AL451074.5-201ENST00000415894 435 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 BTF3P11-201ENST00000426582 477 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 RPS29P6-201ENST00000438196 145 ntBASIC3.51□□□□□ -1.85
USHBP1Q8N6Y0 AP004217.1-201ENST00000480579 346 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms