Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.315-201ENST00000365117 102 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 RNU1-51P-201ENST00000365345 176 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.557-201ENST00000384680 107 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 MIR559-201ENST00000385188 96 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AL359511.1-201ENST00000402970 211 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AL357139.1-201ENST00000407792 426 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 RPS26P42-201ENST00000413485 326 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AL137159.1-201ENST00000452808 512 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 RNA5SP320-201ENST00000516263 124 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AP005660.1-201ENST00000522972 293 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC005034.5-201ENST00000604219 466 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AL627230.6-201ENST00000611129 280 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 TCL6_2.1-201ENST00000615162 119 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC090574.1-201ENST00000623186 233 ntBASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
PDLIM3Q53GG5 AC005336.3-201ENST00000623833 2679 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1305P-201ENST00000364353 104 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.394-201ENST00000383942 103 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 RNU6-611P-201ENST00000384276 104 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 MIR10B-201ENST00000385011 110 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 MIR625-201ENST00000385047 85 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 RNU6-308P-201ENST00000390957 107 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AC114482.1-201ENST00000418010 247 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AF228730.4-201ENST00000421457 183 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 NDUFA5P6-201ENST00000542110 379 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AC093023.1-201ENST00000547375 507 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AC091932.3-201ENST00000624223 323 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 MIR1291-201ENST00000627649 87 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 AL359851.1-201ENST00000569460 4997 ntBASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PDLIM3Q53GG5 SNORD87-201ENST00000364849 89 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.364-201ENST00000365532 101 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.535-201ENST00000384612 99 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 RNU6-159P-201ENST00000391080 106 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AC007215.1-201ENST00000464893 276 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 MRPS17P9-201ENST00000511924 393 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1170P-201ENST00000515974 106 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1198P-201ENST00000516904 67 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 RNA5SP54-201ENST00000516951 92 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 RRN3P3-201ENST00000549207 578 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AC026470.2-201ENST00000561492 181 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 SNRPGP17-201ENST00000603780 214 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 BX322639.1-202ENST00000423987 2213 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.92□□□□□ -2.1
PDLIM3Q53GG5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 ZNF702P-202ENST00000434269 1966 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC073544.1-201ENST00000600110 1595 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNA5SP361-201ENST00000362686 118 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU6-490P-201ENST00000362985 107 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU1-17P-201ENST00000363022 152 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNY1P10-201ENST00000363268 113 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU6-418P-201ENST00000384035 107 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.428-201ENST00000384078 102 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.463-201ENST00000384271 102 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 Y_RNA.577-201ENST00000384794 101 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 MIR518C-201ENST00000384822 101 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 SNORA69.1-201ENST00000390904 137 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNA5SP213-201ENST00000391031 106 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU6-321P-201ENST00000410912 106 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU6-1001P-201ENST00000411265 100 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC139712.2-201ENST00000424302 339 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC016717.1-201ENST00000448918 286 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 HMGN1P13-201ENST00000505795 138 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 RNU6-107P-201ENST00000516643 102 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AL109918.3-201ENST00000603072 338 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AL096840.1-201ENST00000603287 93 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 MZT1P2-201ENST00000604387 248 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 AC090971.5-201ENST00000621102 293 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 MIR6873-201ENST00000622788 63 ntBASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
PDLIM3Q53GG5 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
PDLIM3Q53GG5 RNU1-76P-201ENST00000362903 159 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.132-201ENST00000363421 102 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.179-201ENST00000363844 90 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.415-201ENST00000384012 112 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 RNU6-926P-201ENST00000384075 107 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 Y_RNA.460-201ENST00000384255 102 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 BX510359.4-201ENST00000423750 193 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AL353689.1-201ENST00000438895 199 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AC009237.7-201ENST00000447357 229 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 RNU6-1114P-201ENST00000516022 107 ntBASIC1.9□□□□□ -2.11
PDLIM3Q53GG5 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms