Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SNORD115-38-201ENST00000365037 82 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 RNU6-1286P-201ENST00000383871 107 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 MIR19A-201ENST00000384878 82 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 MIR487A-201ENST00000385009 80 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 RN7SKP266-201ENST00000410232 287 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 SNORD71-201ENST00000411292 86 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC027644.1-201ENST00000419595 298 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC123900.1-201ENST00000420390 96 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC010154.1-201ENST00000425857 269 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL133396.1-201ENST00000432048 687 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 MTND5P2-201ENST00000442927 1142 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 RPS29P15-201ENST00000458329 171 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL139824.2-201ENST00000458731 1095 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 RNU7-56P-201ENST00000458744 62 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 RPL37P6-201ENST00000460682 294 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 SNORA31.3-201ENST00000516029 96 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 RNU6-948P-201ENST00000516374 107 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 MIR2115-201ENST00000516657 100 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 MTND1P36-201ENST00000522384 936 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC011979.2-201ENST00000527568 352 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.03□□□□□ -2.41
COL7A1Q02388 ZNF321P-202ENST00000550843 495 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 MIR3146-201ENST00000580367 79 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL591926.4-201ENST00000616895 298 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AC026585.1-201ENST00000619582 524 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 AL138960.2-201ENST00000625145 535 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 SNORD98-201ENST00000636377 67 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.03□□□□□ -2.41
COL7A1Q02388 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-212P-201ENST00000362642 104 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNA5SP264-201ENST00000363115 107 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU5B-4P-201ENST00000363508 111 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SNORA42.1-201ENST00000363515 137 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-743P-201ENST00000364151 106 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SNORD32B-201ENST00000364460 84 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 Y_RNA.302-201ENST00000364997 102 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-487P-201ENST00000365430 104 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.03□□□□□ -2.42
COL7A1Q02388 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SNORA8.2-201ENST00000384372 139 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR145-201ENST00000384967 88 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-57P-201ENST00000411348 103 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC013262.1-201ENST00000426710 252 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SNAP23P1-201ENST00000433229 246 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 USP9YP28-201ENST00000435142 589 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL606662.1-201ENST00000445763 553 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RPL39P25-201ENST00000449384 154 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL122001.1-201ENST00000457027 370 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 TPT1P7-201ENST00000458300 517 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 snoU13.2-201ENST00000459201 104 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC079382.1-201ENST00000493346 557 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 HSPE1P23-201ENST00000509838 286 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MTND1P22-201ENST00000510572 951 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC091874.1-201ENST00000511402 339 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SUMO2P18-201ENST00000518873 252 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 ZNF519P3-201ENST00000557158 1032 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR3115-201ENST00000577915 68 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR3612-201ENST00000579753 87 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR548AO-201ENST00000579992 96 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR4436A-201ENST00000585278 85 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL139286.2-201ENST00000606838 396 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 RNU6-87P-201ENST00000607561 108 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC007684.1-201ENST00000609671 477 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR1264-201ENST00000616374 69 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL136221.1-201ENST00000621449 509 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AC093648.1-201ENST00000623546 606 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 MIR4788-201ENST00000639104 80 ntBASIC-0.03□□□□□ -2.42
COL7A1Q02388 AL445523.1-201ENST00000451184 1362 ntBASIC-0.04□□□□□ -2.42
COL7A1Q02388 MIR16-2-201ENST00000362117 81 ntBASIC-0.04□□□□□ -2.42
COL7A1Q02388 RNU6-655P-201ENST00000362858 107 ntBASIC-0.04□□□□□ -2.42
COL7A1Q02388 RNU6-199P-201ENST00000362954 107 ntBASIC-0.04□□□□□ -2.42
COL7A1Q02388 Y_RNA.99-201ENST00000363138 105 ntBASIC-0.04□□□□□ -2.42
COL7A1Q02388 SNORA32.1-201ENST00000364514 115 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms