Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 RNA5SP454-201ENST00000517231 127 ntBASIC-0.37□□□□□ -2.47
RPS28P62857 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.37□□□□□ -2.47
RPS28P62857 MIR4498-201ENST00000577599 66 ntBASIC-0.37□□□□□ -2.47
RPS28P62857 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.37□□□□□ -2.47
RPS28P62857 AL078603.1-201ENST00000603824 313 ntBASIC-0.37□□□□□ -2.47
RPS28P62857 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 RNA5SP48-201ENST00000363969 126 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.38□□□□□ -2.47
RPS28P62857 RNU6-756P-201ENST00000383997 107 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 SNORD116-12-201ENST00000384468 92 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 MIR558-201ENST00000384920 94 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC004866.1-201ENST00000411748 78 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.38□□□□□ -2.47
RPS28P62857 USP9YP29-201ENST00000445112 563 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC-0.38□□□□□ -2.47
RPS28P62857 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 snoU13.18-201ENST00000459483 104 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.38□□□□□ -2.47
RPS28P62857 MIR4524B-201ENST00000581569 115 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AP001542.1-201ENST00000591314 200 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC010620.1-201ENST00000601088 1102 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC112187.2-201ENST00000604345 283 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 RNU4-5P-201ENST00000607255 135 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC138749.5-201ENST00000611461 208 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AC008873.1-201ENST00000625051 138 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 AL445984.1-201ENST00000637834 659 ntBASIC-0.38□□□□□ -2.47
RPS28P62857 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.38□□□□□ -2.47
RPS28P62857 AL589826.1-201ENST00000340697 249 ntBASIC-0.39□□□□□ -2.47
RPS28P62857 RNU6-929P-201ENST00000384429 107 ntBASIC-0.39□□□□□ -2.47
RPS28P62857 MIR610-201ENST00000385139 96 ntBASIC-0.39□□□□□ -2.47
RPS28P62857 PDCL2P1-201ENST00000419302 352 ntBASIC-0.39□□□□□ -2.47
RPS28P62857 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC-0.39□□□□□ -2.47
RPS28P62857 RNU6-1053P-201ENST00000515930 101 ntBASIC-0.39□□□□□ -2.47
RPS28P62857 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.39□□□□□ -2.47
RPS28P62857 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC-0.4□□□□□ -2.47
RPS28P62857 MIR145-201ENST00000384967 88 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 MIR214-201ENST00000385214 110 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 MTCYBP36-201ENST00000404146 440 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.4□□□□□ -2.47
RPS28P62857 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.4□□□□□ -2.47
RPS28P62857 AC005534.2-201ENST00000431047 433 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.4□□□□□ -2.47
RPS28P62857 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC-0.4□□□□□ -2.47
RPS28P62857 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC-0.4□□□□□ -2.47
RPS28P62857 RNU11-2P-201ENST00000516898 142 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 RNU1-117P-201ENST00000517041 158 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 RNU6-58P-201ENST00000517143 103 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 AC005592.1-201ENST00000566527 1640 ntBASIC-0.4□□□□□ -2.47
RPS28P62857 RNU6-222P-201ENST00000362438 107 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 RNU6-809P-201ENST00000384461 107 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 MIR1276-201ENST00000408707 83 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 AL590632.1-201ENST00000424289 371 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 MTCO2P29-201ENST00000465212 189 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 RNU7-41P-201ENST00000515917 61 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 SCARNA8-201ENST00000515924 131 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 RNU6-320P-201ENST00000516511 106 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.41□□□□□ -2.48
RPS28P62857 MIR4764-201ENST00000580680 88 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 AC025449.1-201ENST00000603896 529 ntBASIC-0.41□□□□□ -2.48
RPS28P62857 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-0.42□□□□□ -2.48
RPS28P62857 SNORA9.1-201ENST00000362412 131 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 SNORD118-201ENST00000363593 134 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 RNU6-654P-201ENST00000364373 107 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 Y_RNA.338-201ENST00000365320 114 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 Y_RNA.576-201ENST00000384781 102 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 MIR520C-201ENST00000385005 87 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 MIR891A-201ENST00000401237 79 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 ELOCP4-201ENST00000420090 333 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-0.42□□□□□ -2.48
RPS28P62857 AL353997.1-201ENST00000432936 108 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 RPL23AP94-201ENST00000512518 302 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AC010493.1-201ENST00000513479 292 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 RNA5SP220-201ENST00000516298 104 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 RNU6-1178P-201ENST00000516674 107 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AP003049.1-201ENST00000529418 457 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 MIR4438-201ENST00000585271 93 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AC092447.9-201ENST00000603395 144 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AC112191.3-201ENST00000604371 277 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 MIR8076-201ENST00000611401 83 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 AL121895.2-201ENST00000619558 447 ntBASIC-0.42□□□□□ -2.48
RPS28P62857 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC-0.43□□□□□ -2.48
RPS28P62857 RNU6-715P-201ENST00000365204 103 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 RNU6-747P-201ENST00000390928 104 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 RNU6-241P-201ENST00000391148 104 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 RNA5SP482-201ENST00000391269 118 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 MIR320B2-201ENST00000408479 138 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 MIR548H2-201ENST00000408874 88 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 MTCO2P23-201ENST00000425216 680 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC-0.43□□□□□ -2.48
RPS28P62857 RNA5SP94-201ENST00000516917 108 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 AP001372.4-201ENST00000524889 472 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 RBM11P1-201ENST00000604951 799 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 AL512506.1-201ENST00000613918 449 ntBASIC-0.43□□□□□ -2.48
RPS28P62857 UGP2-230ENST00000626380 276 ntTSL 5 BASIC-0.43□□□□□ -2.48
RPS28P62857 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms