Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC004584.2-201ENST00000570407 410 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC005951.2-201ENST00000576282 495 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MIR3618-201ENST00000580330 88 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 RPS29P30-201ENST00000600975 111 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AC012669.1-201ENST00000603209 283 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 MIR8076-201ENST00000611401 83 ntBASIC1.71□□□□□ -2.14
COL4A4P53420 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.71□□□□□ -2.14
COL4A4P53420 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL4A4P53420 Z75746.1-201ENST00000440243 2080 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 RBBP8P1-201ENST00000449447 1844 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AP000560.1-201ENST00000624150 1937 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
COL4A4P53420 Y_RNA.105-201ENST00000363182 111 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 RNU6-263P-201ENST00000363811 107 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 Y_RNA.183-201ENST00000363882 113 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 Y_RNA.277-201ENST00000364754 102 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 MIR578-201ENST00000384828 96 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 MT-TC-201ENST00000387405 66 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 RNU6-712P-201ENST00000410558 100 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC244098.2-201ENST00000422068 99 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 SDAD1P3-201ENST00000427380 333 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 RPEP5-201ENST00000441137 268 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AL138752.1-201ENST00000452964 351 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC107032.1-201ENST00000485945 480 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC022493.1-201ENST00000492984 337 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.7□□□□□ -2.14
COL4A4P53420 RNU4-71P-201ENST00000516258 113 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC022868.1-201ENST00000517767 391 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC091144.1-201ENST00000519573 138 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AL590705.4-201ENST00000532209 134 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC109446.1-201ENST00000566172 220 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.7□□□□□ -2.14
COL4A4P53420 MIR3690-201ENST00000580266 75 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC073410.2-201ENST00000603240 332 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 AC127459.3-201ENST00000624328 466 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 ZNF299P-201ENST00000406845 1804 ntBASIC1.7□□□□□ -2.14
COL4A4P53420 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
COL4A4P53420 LINC02555-201ENST00000563933 1951 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
COL4A4P53420 Y_RNA.29-201ENST00000362570 113 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU6-545P-201ENST00000362681 104 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU6-774P-201ENST00000363238 107 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU1-42P-201ENST00000364033 160 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU4-41P-201ENST00000364426 143 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU6-60P-201ENST00000364792 103 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNY3P4-201ENST00000384428 101 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 Y_RNA.534-201ENST00000384599 112 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU6-1179P-201ENST00000384667 107 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNA5SP56-201ENST00000410277 118 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 MTATP6P29-201ENST00000415057 132 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 MTCO3P29-201ENST00000432119 779 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 AL360271.2-201ENST00000447710 161 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.69□□□□□ -2.14
COL4A4P53420 U8.21-201ENST00000459536 136 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RPL37P6-202ENST00000464216 403 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 UBE2Q2P9-201ENST00000490086 202 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU1-86P-201ENST00000516108 154 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNU1-107P-201ENST00000516617 154 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 RNA5SP364-201ENST00000516938 78 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 Y_RNA.713-201ENST00000517013 96 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.69□□□□□ -2.14
COL4A4P53420 AC109329.1-201ENST00000518744 317 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.69□□□□□ -2.14
COL4A4P53420 AL442163.3-201ENST00000554110 156 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC1.69□□□□□ -2.14
COL4A4P53420 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.69□□□□□ -2.14
COL4A4P53420 AC130289.1-201ENST00000577321 73 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 MIR5694-201ENST00000581190 76 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.69□□□□□ -2.14
COL4A4P53420 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
COL4A4P53420 AC090617.7-201ENST00000623952 126 ntBASIC1.69□□□□□ -2.14
COL4A4P53420 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.69□□□□□ -2.14
COL4A4P53420 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
COL4A4P53420 Y_RNA.143-201ENST00000363520 106 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 RNU6-1155P-201ENST00000363554 107 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 Y_RNA.200-201ENST00000364018 102 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 Y_RNA.237-201ENST00000364439 102 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 Y_RNA.270-201ENST00000364693 104 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL4A4P53420 AL603910.2-201ENST00000407268 136 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 MTCYBP2-201ENST00000407745 171 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 MIR1298-201ENST00000408783 112 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 RNU4-78P-201ENST00000410940 126 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 AL627311.1-201ENST00000431514 115 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 AL139109.1-201ENST00000455491 297 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 snoU13.3-201ENST00000459441 104 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 MIR892C-201ENST00000516410 77 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 RNU6-1223P-201ENST00000517124 104 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 SNORA81.3-201ENST00000517283 198 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.68□□□□□ -2.14
COL4A4P53420 TRAV32-201ENST00000553993 340 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 AL157871.3-201ENST00000557231 293 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 AL713866.2-201ENST00000603579 219 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.68□□□□□ -2.14
COL4A4P53420 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.68□□□□□ -2.14
COL4A4P53420 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.68□□□□□ -2.14
COL4A4P53420 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL4A4P53420 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL4A4P53420 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms