Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 JTBP1-201ENST00000441314 247 ntBASIC1.3□□□□□ -2.2
MSH6P52701 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.3□□□□□ -2.2
MSH6P52701 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.3□□□□□ -2.2
MSH6P52701 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.3□□□□□ -2.2
MSH6P52701 MIR4698-201ENST00000577795 80 ntBASIC1.3□□□□□ -2.2
MSH6P52701 NBR2-204ENST00000587322 63 ntBASIC1.3□□□□□ -2.2
MSH6P52701 RNU6-89P-201ENST00000606519 100 ntBASIC1.3□□□□□ -2.2
MSH6P52701 AC004492.1-201ENST00000607036 742 ntBASIC1.3□□□□□ -2.2
MSH6P52701 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.3□□□□□ -2.2
MSH6P52701 FER-210ENST00000628534 558 ntTSL 5 BASIC1.3□□□□□ -2.2
MSH6P52701 RNU6-862P-201ENST00000362804 105 ntBASIC1.29□□□□□ -2.2
MSH6P52701 Y_RNA.123-201ENST00000363338 102 ntBASIC1.29□□□□□ -2.2
MSH6P52701 SNORD114-23-201ENST00000363536 72 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RNU6-418P-201ENST00000384035 107 ntBASIC1.29□□□□□ -2.2
MSH6P52701 SNORD116-2-201ENST00000384274 95 ntBASIC1.29□□□□□ -2.2
MSH6P52701 SNORD116-6-201ENST00000384711 96 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RNU6-360P-201ENST00000390944 104 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RNA5SP494-201ENST00000410653 129 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RNU6-1068P-201ENST00000410958 103 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RNU6-325P-201ENST00000411132 105 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RPL21P111-201ENST00000418453 477 ntBASIC1.29□□□□□ -2.2
MSH6P52701 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.29□□□□□ -2.2
MSH6P52701 MTCO1P20-201ENST00000425366 358 ntBASIC1.29□□□□□ -2.2
MSH6P52701 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.29□□□□□ -2.2
MSH6P52701 UBE2V1P8-201ENST00000437166 265 ntBASIC1.29□□□□□ -2.2
MSH6P52701 RPS29P28-201ENST00000446439 141 ntBASIC1.29□□□□□ -2.2
MSH6P52701 AC007215.1-201ENST00000464893 276 ntBASIC1.29□□□□□ -2.2
MSH6P52701 AL512360.1-201ENST00000555346 234 ntBASIC1.29□□□□□ -2.2
MSH6P52701 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.29□□□□□ -2.2
MSH6P52701 SNORA77B-201ENST00000578179 125 ntBASIC1.29□□□□□ -2.2
MSH6P52701 PRR13P7-201ENST00000605538 430 ntBASIC1.29□□□□□ -2.2
MSH6P52701 MIR8076-201ENST00000611401 83 ntBASIC1.29□□□□□ -2.2
MSH6P52701 FAM157A-202ENST00000615155 405 ntBASIC1.29□□□□□ -2.2
MSH6P52701 TCL6_2.1-201ENST00000615162 119 ntBASIC1.29□□□□□ -2.2
MSH6P52701 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
MSH6P52701 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.29□□□□□ -2.2
MSH6P52701 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
MSH6P52701 RNU6-784P-201ENST00000384330 106 ntBASIC1.28□□□□□ -2.2
MSH6P52701 MIR450B-201ENST00000401182 78 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AL117342.1-201ENST00000404861 406 ntBASIC1.28□□□□□ -2.2
MSH6P52701 MIR1283-1-201ENST00000408494 87 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC060773.1-201ENST00000421698 310 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC004941.2-201ENST00000427009 228 ntBASIC1.28□□□□□ -2.2
MSH6P52701 MRPS10P2-201ENST00000431226 381 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC245047.4-201ENST00000433189 144 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.28□□□□□ -2.2
MSH6P52701 AC019235.1-201ENST00000503847 207 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC025465.3-201ENST00000510570 311 ntBASIC1.28□□□□□ -2.2
MSH6P52701 RNU6-856P-201ENST00000516959 98 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC005562.2-201ENST00000618264 111 ntBASIC1.28□□□□□ -2.2
MSH6P52701 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.28□□□□□ -2.2
MSH6P52701 AC010487.4-201ENST00000637027 61 ntBASIC1.28□□□□□ -2.2
MSH6P52701 MIR924-201ENST00000638017 53 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC068137.3-201ENST00000639191 341 ntBASIC1.28□□□□□ -2.2
MSH6P52701 AC010615.1-201ENST00000594254 1764 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU6-254P-201ENST00000363377 107 ntBASIC1.27□□□□□ -2.21
MSH6P52701 Y_RNA.231-201ENST00000364358 102 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU6-1019P-201ENST00000364424 107 ntBASIC1.27□□□□□ -2.21
MSH6P52701 Y_RNA.258-201ENST00000364613 105 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU6-877P-201ENST00000383868 107 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU1-78P-201ENST00000391248 165 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH6P52701 ERLEC1P1-201ENST00000433806 578 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC004386.2-201ENST00000441858 148 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC005908.1-201ENST00000468701 347 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RPL26P26-201ENST00000480251 434 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC083904.1-201ENST00000487828 231 ntBASIC1.27□□□□□ -2.21
MSH6P52701 MTCO1P29-201ENST00000496868 288 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC091435.1-201ENST00000505442 584 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU6-1332P-201ENST00000516666 104 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
MSH6P52701 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH6P52701 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH6P52701 AC026371.1-201ENST00000551867 419 ntBASIC1.27□□□□□ -2.21
MSH6P52701 AC026470.2-201ENST00000561492 181 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RMST_3.1-201ENST00000611651 109 ntBASIC1.27□□□□□ -2.21
MSH6P52701 RNU6-483P-201ENST00000384088 108 ntBASIC1.26□□□□□ -2.21
MSH6P52701 MIR520A-201ENST00000384862 85 ntBASIC1.26□□□□□ -2.21
MSH6P52701 MIR936-201ENST00000401264 98 ntBASIC1.26□□□□□ -2.21
MSH6P52701 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH6P52701 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH6P52701 HSPE1P9-201ENST00000440046 311 ntBASIC1.26□□□□□ -2.21
MSH6P52701 OR2AQ1P-201ENST00000451972 200 ntBASIC1.26□□□□□ -2.21
MSH6P52701 HMGN2P9-201ENST00000476875 229 ntBASIC1.26□□□□□ -2.21
MSH6P52701 HMGN1P13-201ENST00000505795 138 ntBASIC1.26□□□□□ -2.21
MSH6P52701 RNU6-1041P-201ENST00000516254 102 ntBASIC1.26□□□□□ -2.21
MSH6P52701 RNU6-948P-201ENST00000516374 107 ntBASIC1.26□□□□□ -2.21
MSH6P52701 RNU2-34P-201ENST00000516534 121 ntBASIC1.26□□□□□ -2.21
MSH6P52701 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH6P52701 RRN3P3-201ENST00000549207 578 ntBASIC1.26□□□□□ -2.21
MSH6P52701 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.26□□□□□ -2.21
MSH6P52701 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.26□□□□□ -2.21
MSH6P52701 SNORA59B-202ENST00000578183 701 ntBASIC1.26□□□□□ -2.21
MSH6P52701 MIR5006-201ENST00000583027 110 ntBASIC1.26□□□□□ -2.21
MSH6P52701 AP000907.4-201ENST00000604143 237 ntBASIC1.26□□□□□ -2.21
MSH6P52701 AC104458.1-201ENST00000608243 463 ntBASIC1.26□□□□□ -2.21
MSH6P52701 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.26□□□□□ -2.21
MSH6P52701 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
MSH6P52701 BX322639.1-202ENST00000423987 2213 ntBASIC1.25□□□□□ -2.21
MSH6P52701 RNA5SP257-201ENST00000363023 116 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms