Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.37□□□□□ -2.35
RPL28P46779 AC133104.1-201ENST00000429100 218 ntBASIC0.37□□□□□ -2.35
RPL28P46779 MTND3P9-201ENST00000429526 346 ntBASIC0.37□□□□□ -2.35
RPL28P46779 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.37□□□□□ -2.35
RPL28P46779 FABP5P4-201ENST00000437203 171 ntBASIC0.37□□□□□ -2.35
RPL28P46779 RPEP5-201ENST00000441137 268 ntBASIC0.37□□□□□ -2.35
RPL28P46779 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.37□□□□□ -2.35
RPL28P46779 AL157398.1-201ENST00000452981 186 ntBASIC0.37□□□□□ -2.35
RPL28P46779 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.37□□□□□ -2.35
RPL28P46779 RPL39P39-201ENST00000455840 151 ntBASIC0.37□□□□□ -2.35
RPL28P46779 RNU7-94P-201ENST00000459576 63 ntBASIC0.37□□□□□ -2.35
RPL28P46779 RPS27P22-201ENST00000478056 241 ntBASIC0.37□□□□□ -2.35
RPL28P46779 BET1P1-201ENST00000482276 359 ntBASIC0.37□□□□□ -2.35
RPL28P46779 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.37□□□□□ -2.35
RPL28P46779 SNORA70.12-201ENST00000516084 153 ntBASIC0.37□□□□□ -2.35
RPL28P46779 MRPS36P4-201ENST00000534436 298 ntBASIC0.37□□□□□ -2.35
RPL28P46779 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.37□□□□□ -2.35
RPL28P46779 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.37□□□□□ -2.35
RPL28P46779 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.37□□□□□ -2.35
RPL28P46779 MIR5583-1-201ENST00000580941 59 ntBASIC0.37□□□□□ -2.35
RPL28P46779 FGF7P1-201ENST00000582820 288 ntBASIC0.37□□□□□ -2.35
RPL28P46779 RMST_3.1-201ENST00000611651 109 ntBASIC0.37□□□□□ -2.35
RPL28P46779 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.37□□□□□ -2.35
RPL28P46779 SNORD18A-201ENST00000363753 72 ntBASIC0.36□□□□□ -2.35
RPL28P46779 SNORD116-13-201ENST00000384408 92 ntBASIC0.36□□□□□ -2.35
RPL28P46779 RNU6-297P-201ENST00000384636 107 ntBASIC0.36□□□□□ -2.35
RPL28P46779 MIR499A-201ENST00000384903 122 ntBASIC0.36□□□□□ -2.35
RPL28P46779 MIR320B2-201ENST00000408479 138 ntBASIC0.36□□□□□ -2.35
RPL28P46779 RNU6-584P-201ENST00000410350 95 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.36□□□□□ -2.35
RPL28P46779 SNORD42A-201ENST00000459584 64 ntBASIC0.36□□□□□ -2.35
RPL28P46779 RPS29P1-201ENST00000465274 159 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AL049830.1-201ENST00000468034 425 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AC113410.1-201ENST00000505029 247 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.36□□□□□ -2.35
RPL28P46779 RNU4-54P-201ENST00000516428 129 ntBASIC0.36□□□□□ -2.35
RPL28P46779 RNA5SP121-201ENST00000516537 101 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AP002001.1-203ENST00000534002 267 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AC004812.1-201ENST00000540773 146 ntBASIC0.36□□□□□ -2.35
RPL28P46779 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.36□□□□□ -2.35
RPL28P46779 AL137100.2-201ENST00000555786 315 ntBASIC0.36□□□□□ -2.35
RPL28P46779 MIR151B-201ENST00000584249 96 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AL078603.1-201ENST00000603824 313 ntBASIC0.36□□□□□ -2.35
RPL28P46779 SNORA28-201ENST00000606769 126 ntBASIC0.36□□□□□ -2.35
RPL28P46779 AC009229.3-201ENST00000608056 282 ntBASIC0.36□□□□□ -2.35
RPL28P46779 RNA5SP347-201ENST00000362445 119 ntBASIC0.35□□□□□ -2.35
RPL28P46779 RNU6-181P-201ENST00000363225 107 ntBASIC0.35□□□□□ -2.35
RPL28P46779 U3.8-201ENST00000363675 217 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.35□□□□□ -2.35
RPL28P46779 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.35□□□□□ -2.35
RPL28P46779 RNU6-424P-201ENST00000384367 105 ntBASIC0.35□□□□□ -2.35
RPL28P46779 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.35□□□□□ -2.35
RPL28P46779 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.35□□□□□ -2.35
RPL28P46779 AL445305.1-201ENST00000432577 575 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.35□□□□□ -2.35
RPL28P46779 STAG3L5P-204ENST00000443759 179 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.35□□□□□ -2.35
RPL28P46779 AL356010.1-201ENST00000456364 102 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC245047.8-201ENST00000456455 284 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.35□□□□□ -2.35
RPL28P46779 RNU7-180P-201ENST00000459240 63 ntBASIC0.35□□□□□ -2.35
RPL28P46779 U8.21-201ENST00000459536 136 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC022493.2-201ENST00000506122 481 ntBASIC0.35□□□□□ -2.35
RPL28P46779 SNORA18.6-201ENST00000516792 115 ntBASIC0.35□□□□□ -2.35
RPL28P46779 RNU6-445P-201ENST00000516949 107 ntBASIC0.35□□□□□ -2.35
RPL28P46779 RNU1-117P-201ENST00000517041 158 ntBASIC0.35□□□□□ -2.35
RPL28P46779 RNU6-430P-201ENST00000517078 107 ntBASIC0.35□□□□□ -2.35
RPL28P46779 RNA5SP454-201ENST00000517231 127 ntBASIC0.35□□□□□ -2.35
RPL28P46779 HIF1AP1-201ENST00000553642 175 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.35□□□□□ -2.35
RPL28P46779 AC090616.2-202ENST00000584248 222 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC012557.2-201ENST00000605919 418 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC004832.4-201ENST00000608952 331 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC064836.2-201ENST00000609491 462 ntBASIC0.35□□□□□ -2.35
RPL28P46779 MIR6788-201ENST00000618842 66 ntBASIC0.35□□□□□ -2.35
RPL28P46779 AC023934.1-201ENST00000574529 2389 ntBASIC0.35□□□□□ -2.35
RPL28P46779 Y_RNA.123-201ENST00000363338 102 ntBASIC0.34□□□□□ -2.36
RPL28P46779 Y_RNA.224-201ENST00000364308 111 ntBASIC0.34□□□□□ -2.36
RPL28P46779 RNU6-517P-201ENST00000384362 110 ntBASIC0.34□□□□□ -2.36
RPL28P46779 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.34□□□□□ -2.36
RPL28P46779 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
RPL28P46779 AL031577.2-201ENST00000404133 280 ntBASIC0.34□□□□□ -2.36
RPL28P46779 MIR1185-2-201ENST00000408687 86 ntBASIC0.34□□□□□ -2.36
RPL28P46779 RNU6-248P-201ENST00000410720 107 ntBASIC0.34□□□□□ -2.36
RPL28P46779 CYCSP46-201ENST00000423569 204 ntBASIC0.34□□□□□ -2.36
RPL28P46779 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.34□□□□□ -2.36
RPL28P46779 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.34□□□□□ -2.36
RPL28P46779 MTCO2P7-201ENST00000446518 666 ntBASIC0.34□□□□□ -2.36
RPL28P46779 NDUFB4P10-201ENST00000452541 359 ntBASIC0.34□□□□□ -2.36
RPL28P46779 TPT1P7-201ENST00000458300 517 ntBASIC0.34□□□□□ -2.36
RPL28P46779 MTND3P3-201ENST00000505004 126 ntBASIC0.34□□□□□ -2.36
RPL28P46779 RNU6-1129P-201ENST00000515964 104 ntBASIC0.34□□□□□ -2.36
RPL28P46779 SNORA14.1-201ENST00000516113 141 ntBASIC0.34□□□□□ -2.36
RPL28P46779 MTND1P5-201ENST00000517906 940 ntBASIC0.34□□□□□ -2.36
RPL28P46779 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
RPL28P46779 AC018659.1-201ENST00000551083 169 ntBASIC0.34□□□□□ -2.36
RPL28P46779 SCOCP1-201ENST00000554676 349 ntBASIC0.34□□□□□ -2.36
RPL28P46779 SNORD11B-201ENST00000607707 90 ntBASIC0.34□□□□□ -2.36
RPL28P46779 AL391903.3-201ENST00000612158 163 ntBASIC0.34□□□□□ -2.36
RPL28P46779 AC137590.2-201ENST00000619709 240 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms