Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AL132765.2-201ENST00000610812 351 ntBASIC1.72□□□□□ -2.13
TNFRSF4P43489 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.72□□□□□ -2.13
TNFRSF4P43489 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.72□□□□□ -2.13
TNFRSF4P43489 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.72□□□□□ -2.13
TNFRSF4P43489 SCARNA4-201ENST00000629045 128 ntBASIC1.72□□□□□ -2.13
TNFRSF4P43489 AL669831.3-213ENST00000636676 183 ntBASIC1.72□□□□□ -2.13
TNFRSF4P43489 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.72□□□□□ -2.13
TNFRSF4P43489 AC245060.5-201ENST00000610778 3293 ntBASIC1.72□□□□□ -2.13
TNFRSF4P43489 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
TNFRSF4P43489 RNU4-9P-201ENST00000364951 139 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 Y_RNA.404-201ENST00000383978 102 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 RNU6-331P-201ENST00000384724 107 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 MIR549A-201ENST00000385268 96 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
TNFRSF4P43489 RPS26P42-201ENST00000413485 326 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 AC243428.1-201ENST00000421099 264 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 WARS2P1-201ENST00000429678 537 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 AL353997.1-201ENST00000432936 108 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 OR2AQ1P-201ENST00000451972 200 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.71□□□□□ -2.14
TNFRSF4P43489 AC016925.1-201ENST00000458303 298 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 RNU6-307P-201ENST00000516743 106 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 AC026470.2-201ENST00000561492 181 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 FRG2DP-202ENST00000566967 323 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 AL355375.2-201ENST00000574825 175 ntBASIC1.71□□□□□ -2.14
TNFRSF4P43489 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.71□□□□□ -2.14
TNFRSF4P43489 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.7□□□□□ -2.14
TNFRSF4P43489 CENPCP1-201ENST00000533085 2578 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR337-201ENST00000362281 93 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 Y_RNA.132-201ENST00000363421 102 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 Y_RNA.259-201ENST00000364619 101 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 Y_RNA.263-201ENST00000364659 114 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 Y_RNA.387-201ENST00000383918 102 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNU6-1297P-201ENST00000384415 104 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNU6-541P-201ENST00000384709 110 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 SNORA12.2-201ENST00000391040 156 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC009310.1-201ENST00000414414 451 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC007395.1-201ENST00000451333 677 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AL163540.1-201ENST00000485382 386 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNU6-277P-201ENST00000516272 106 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNVU1-2-201ENST00000516326 135 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 SCARNA16.2-201ENST00000516520 172 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNA5SP384-201ENST00000516615 116 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AL590705.4-201ENST00000532209 134 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC022254.1-201ENST00000567857 235 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR5696-201ENST00000578474 85 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR4303-201ENST00000581299 66 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR3935-201ENST00000583472 104 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR5690-201ENST00000583739 73 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 MIR4781-201ENST00000585250 76 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC005562.2-201ENST00000618264 111 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC137590.2-201ENST00000619709 240 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AL359697.1-201ENST00000624879 587 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 AC112487.2-201ENST00000637950 304 ntBASIC1.7□□□□□ -2.14
TNFRSF4P43489 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
TNFRSF4P43489 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNU6-1188P-201ENST00000363795 107 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNU5E-4P-201ENST00000364931 120 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNU6-867P-201ENST00000364956 107 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNU4-52P-201ENST00000384209 138 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 MIR487A-201ENST00000385009 80 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 MIR300-201ENST00000401138 83 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 SUMO2P12-201ENST00000405924 140 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNA5SP338-201ENST00000410495 85 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNA5SP489-201ENST00000410986 109 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.69□□□□□ -2.14
TNFRSF4P43489 MTCO3P29-201ENST00000432119 779 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RPL30P15-201ENST00000457129 321 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.69□□□□□ -2.14
TNFRSF4P43489 snoU13.30-201ENST00000458951 104 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 Y_RNA.653-201ENST00000459091 95 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 RNU2-44P-201ENST00000516795 194 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 SUMO2P18-201ENST00000518873 252 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 APOOP3-201ENST00000536787 586 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 CBX3P4-201ENST00000538909 354 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AC104581.2-201ENST00000572227 430 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AC005899.2-201ENST00000584353 90 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AC010928.2-201ENST00000588017 287 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AC016727.2-201ENST00000603988 621 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 MTND4LP32-201ENST00000636111 270 ntBASIC1.69□□□□□ -2.14
TNFRSF4P43489 AC006026.1-201ENST00000444025 1803 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 MIR340-201ENST00000362125 95 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 Y_RNA.67-201ENST00000362870 100 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 RNU6-595P-201ENST00000363944 107 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 MIR153-2-201ENST00000385225 87 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 RNU2-40P-201ENST00000410833 196 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 HMGN2P38-201ENST00000423806 265 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 AL445305.1-201ENST00000432577 575 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.68□□□□□ -2.14
TNFRSF4P43489 RPL30P10-201ENST00000488148 337 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.68□□□□□ -2.14
TNFRSF4P43489 RNU7-175P-201ENST00000515915 61 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 Y_RNA.675-201ENST00000516389 149 ntBASIC1.68□□□□□ -2.14
TNFRSF4P43489 DEFB131C-201ENST00000528817 165 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms