Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.08□□□□□ -2.08
MSH2P43246 MIR340-201ENST00000362125 95 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RNU1-62P-201ENST00000362599 164 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RNU6-490P-201ENST00000362985 107 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RNU5F-3P-201ENST00000363767 117 ntBASIC2.07□□□□□ -2.08
MSH2P43246 SNORA67.2-201ENST00000384300 149 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RNA5SP212-201ENST00000391223 107 ntBASIC2.07□□□□□ -2.08
MSH2P43246 SNORA11.4-201ENST00000408823 129 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RNU6-1156P-201ENST00000410365 100 ntBASIC2.07□□□□□ -2.08
MSH2P43246 RN7SKP192-201ENST00000411291 327 ntBASIC2.07□□□□□ -2.08
MSH2P43246 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.07□□□□□ -2.08
MSH2P43246 Z98742.3-201ENST00000418637 326 ntBASIC2.07□□□□□ -2.08
MSH2P43246 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.07□□□□□ -2.08
MSH2P43246 AC096638.1-201ENST00000444678 216 ntBASIC2.07□□□□□ -2.08
MSH2P43246 MIR5695-201ENST00000579717 85 ntBASIC2.07□□□□□ -2.08
MSH2P43246 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.07□□□□□ -2.08
MSH2P43246 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.07□□□□□ -2.08
MSH2P43246 CENPCP1-201ENST00000533085 2578 ntBASIC2.07□□□□□ -2.08
MSH2P43246 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
MSH2P43246 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
MSH2P43246 Y_RNA.146-201ENST00000363549 102 ntBASIC2.06□□□□□ -2.08
MSH2P43246 SNORD114-6-201ENST00000364393 72 ntBASIC2.06□□□□□ -2.08
MSH2P43246 RNU6-281P-201ENST00000384212 103 ntBASIC2.06□□□□□ -2.08
MSH2P43246 Y_RNA.557-201ENST00000384680 107 ntBASIC2.06□□□□□ -2.08
MSH2P43246 MIR586-201ENST00000385035 97 ntBASIC2.06□□□□□ -2.08
MSH2P43246 SNORA3.2-201ENST00000408221 125 ntBASIC2.06□□□□□ -2.08
MSH2P43246 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.06□□□□□ -2.08
MSH2P43246 EIF1P2-201ENST00000428233 350 ntBASIC2.06□□□□□ -2.08
MSH2P43246 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.06□□□□□ -2.08
MSH2P43246 MTCO1P44-201ENST00000441935 243 ntBASIC2.06□□□□□ -2.08
MSH2P43246 AC007395.1-201ENST00000451333 677 ntBASIC2.06□□□□□ -2.08
MSH2P43246 MIR2053-201ENST00000459295 91 ntBASIC2.06□□□□□ -2.08
MSH2P43246 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.06□□□□□ -2.08
MSH2P43246 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.06□□□□□ -2.08
MSH2P43246 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.06□□□□□ -2.08
MSH2P43246 MIR4753-201ENST00000585119 83 ntBASIC2.06□□□□□ -2.08
MSH2P43246 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.06□□□□□ -2.08
MSH2P43246 SNORD11B-201ENST00000607707 90 ntBASIC2.06□□□□□ -2.08
MSH2P43246 AL590240.4-201ENST00000616908 390 ntBASIC2.06□□□□□ -2.08
MSH2P43246 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.06□□□□□ -2.08
MSH2P43246 LINC02555-201ENST00000563933 1951 ntBASIC2.06□□□□□ -2.08
MSH2P43246 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
MSH2P43246 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
MSH2P43246 Y_RNA.132-201ENST00000363421 102 ntBASIC2.05□□□□□ -2.08
MSH2P43246 RNA5SP493-201ENST00000364115 91 ntBASIC2.05□□□□□ -2.08
MSH2P43246 Y_RNA.358-201ENST00000365491 99 ntBASIC2.05□□□□□ -2.08
MSH2P43246 RNU6-793P-201ENST00000384233 104 ntBASIC2.05□□□□□ -2.08
MSH2P43246 MIR625-201ENST00000385047 85 ntBASIC2.05□□□□□ -2.08
MSH2P43246 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
MSH2P43246 RNA5SP504-201ENST00000410676 117 ntBASIC2.05□□□□□ -2.08
MSH2P43246 MRPS18CP6-201ENST00000423587 223 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC139712.2-201ENST00000424302 339 ntBASIC2.05□□□□□ -2.08
MSH2P43246 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.05□□□□□ -2.08
MSH2P43246 U8.22-201ENST00000459141 133 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC010531.2-201ENST00000465012 153 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC091179.3-201ENST00000474761 144 ntBASIC2.05□□□□□ -2.08
MSH2P43246 HMGN2P9-201ENST00000476875 229 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC105758.1-201ENST00000506038 399 ntBASIC2.05□□□□□ -2.08
MSH2P43246 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.05□□□□□ -2.08
MSH2P43246 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.05□□□□□ -2.08
MSH2P43246 AC080078.3-201ENST00000605407 463 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AL133255.1-201ENST00000606374 441 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC087588.2-201ENST00000617667 426 ntBASIC2.05□□□□□ -2.08
MSH2P43246 AC008873.1-201ENST00000625051 138 ntBASIC2.05□□□□□ -2.08
MSH2P43246 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
MSH2P43246 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSH2P43246 Y_RNA.61-201ENST00000362835 102 ntBASIC2.04□□□□□ -2.08
MSH2P43246 U8.2-201ENST00000363156 134 ntBASIC2.04□□□□□ -2.08
MSH2P43246 Y_RNA.179-201ENST00000363844 90 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU6-1305P-201ENST00000364353 104 ntBASIC2.04□□□□□ -2.08
MSH2P43246 Y_RNA.579-201ENST00000390939 94 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AL033519.2-201ENST00000403958 392 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.04□□□□□ -2.08
MSH2P43246 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
MSH2P43246 UBE2V1P7-201ENST00000446395 340 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU1-131P-201ENST00000458943 161 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU7-4P-201ENST00000516961 62 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU1-117P-201ENST00000517041 158 ntBASIC2.04□□□□□ -2.08
MSH2P43246 RNU6-699P-201ENST00000517081 110 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC093023.1-201ENST00000547375 507 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC125232.2-201ENST00000592457 143 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC073544.1-201ENST00000600110 1595 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC013412.1-201ENST00000610687 192 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC010999.1-201ENST00000611856 324 ntBASIC2.04□□□□□ -2.08
MSH2P43246 AC068205.3-201ENST00000636385 468 ntBASIC2.04□□□□□ -2.08
MSH2P43246 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH2P43246 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.03□□□□□ -2.08
MSH2P43246 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH2P43246 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
MSH2P43246 RNU6-1115P-201ENST00000362490 106 ntBASIC2.03□□□□□ -2.08
MSH2P43246 RNU6-727P-201ENST00000363592 107 ntBASIC2.03□□□□□ -2.08
MSH2P43246 Y_RNA.315-201ENST00000365117 102 ntBASIC2.03□□□□□ -2.08
MSH2P43246 RNU6-418P-201ENST00000384035 107 ntBASIC2.03□□□□□ -2.08
MSH2P43246 Y_RNA.463-201ENST00000384271 102 ntBASIC2.03□□□□□ -2.08
MSH2P43246 SNORA69.1-201ENST00000390904 137 ntBASIC2.03□□□□□ -2.08
MSH2P43246 SNORA11.2-201ENST00000408318 127 ntBASIC2.03□□□□□ -2.08
MSH2P43246 RNA5SP489-201ENST00000410986 109 ntBASIC2.03□□□□□ -2.08
MSH2P43246 DPH3P2-201ENST00000422618 250 ntBASIC2.03□□□□□ -2.08
MSH2P43246 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH2P43246 AC114982.1-201ENST00000469402 321 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms