Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 U2.12-201ENST00000613778 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.9-201ENST00000615427 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.11-201ENST00000616345 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.2-201ENST00000616535 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.3-201ENST00000617785 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.19-201ENST00000618602 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 RNU2-1-201ENST00000618664 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.6-201ENST00000619225 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.5-201ENST00000619465 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 U2.10-201ENST00000620268 191 ntBASIC2.95□□□□□ -1.94
MSX2P35548 MTND1P7-201ENST00000632801 297 ntBASIC2.95□□□□□ -1.94
MSX2P35548 AC068205.3-201ENST00000636385 468 ntBASIC2.95□□□□□ -1.94
MSX2P35548 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
MSX2P35548 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.95□□□□□ -1.94
MSX2P35548 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.95□□□□□ -1.94
MSX2P35548 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
MSX2P35548 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
MSX2P35548 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.95□□□□□ -1.94
MSX2P35548 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
MSX2P35548 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.94□□□□□ -1.94
MSX2P35548 AC068700.1-201ENST00000565862 3754 ntBASIC2.94□□□□□ -1.94
MSX2P35548 Y_RNA.23-201ENST00000362496 106 ntBASIC2.94□□□□□ -1.94
MSX2P35548 Y_RNA.75-201ENST00000362927 97 ntBASIC2.94□□□□□ -1.94
MSX2P35548 Y_RNA.121-201ENST00000363309 113 ntBASIC2.94□□□□□ -1.94
MSX2P35548 U3.9-201ENST00000363823 204 ntBASIC2.94□□□□□ -1.94
MSX2P35548 RNA5SP72-201ENST00000364442 117 ntBASIC2.94□□□□□ -1.94
MSX2P35548 SNORA18.2-201ENST00000383865 132 ntBASIC2.94□□□□□ -1.94
MSX2P35548 MIR186-201ENST00000384988 86 ntBASIC2.94□□□□□ -1.94
MSX2P35548 MIR147B-201ENST00000390185 80 ntBASIC2.94□□□□□ -1.94
MSX2P35548 SNORA40.19-201ENST00000390846 128 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AL031121.1-201ENST00000406553 254 ntBASIC2.94□□□□□ -1.94
MSX2P35548 RN7SKP123-201ENST00000410732 291 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AC104332.2-201ENST00000429959 156 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.94□□□□□ -1.94
MSX2P35548 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.94□□□□□ -1.94
MSX2P35548 RPS3P1-201ENST00000456781 192 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AC145146.1-201ENST00000496370 254 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.94□□□□□ -1.94
MSX2P35548 RNU6-107P-201ENST00000516643 102 ntBASIC2.94□□□□□ -1.94
MSX2P35548 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.94□□□□□ -1.94
MSX2P35548 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.94□□□□□ -1.94
MSX2P35548 MIR548AI-201ENST00000579940 88 ntBASIC2.94□□□□□ -1.94
MSX2P35548 MIR4506-201ENST00000584693 77 ntBASIC2.94□□□□□ -1.94
MSX2P35548 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.93□□□□□ -1.94
MSX2P35548 RNU6-1210P-201ENST00000363775 107 ntBASIC2.93□□□□□ -1.94
MSX2P35548 RNU6-324P-201ENST00000363957 106 ntBASIC2.93□□□□□ -1.94
MSX2P35548 RNU6-312P-201ENST00000364629 107 ntBASIC2.93□□□□□ -1.94
MSX2P35548 SNORA67.2-201ENST00000384300 149 ntBASIC2.93□□□□□ -1.94
MSX2P35548 SNORA26.5-201ENST00000391215 123 ntBASIC2.93□□□□□ -1.94
MSX2P35548 AL031003.1-201ENST00000404229 172 ntBASIC2.93□□□□□ -1.94
MSX2P35548 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
MSX2P35548 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.93□□□□□ -1.94
MSX2P35548 AL441985.1-201ENST00000457727 251 ntBASIC2.93□□□□□ -1.94
MSX2P35548 RPS27AP9-201ENST00000477681 438 ntBASIC2.93□□□□□ -1.94
MSX2P35548 AC106707.2-201ENST00000484182 374 ntBASIC2.93□□□□□ -1.94
MSX2P35548 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.93□□□□□ -1.94
MSX2P35548 SNORA74D-201ENST00000516404 141 ntBASIC2.93□□□□□ -1.94
MSX2P35548 SCARNA13-201ENST00000516672 275 ntBASIC2.93□□□□□ -1.94
MSX2P35548 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.93□□□□□ -1.94
MSX2P35548 MIR3200-201ENST00000580767 85 ntBASIC2.93□□□□□ -1.94
MSX2P35548 MIR3922-201ENST00000585192 84 ntBASIC2.93□□□□□ -1.94
MSX2P35548 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
MSX2P35548 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
MSX2P35548 AC073346.2-201ENST00000624724 2058 ntBASIC2.92□□□□□ -1.94
MSX2P35548 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX2P35548 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
MSX2P35548 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX2P35548 RNU6-655P-201ENST00000362858 107 ntBASIC2.92□□□□□ -1.94
MSX2P35548 RNU4-84P-201ENST00000364200 139 ntBASIC2.92□□□□□ -1.94
MSX2P35548 Y_RNA.243-201ENST00000364481 109 ntBASIC2.92□□□□□ -1.94
MSX2P35548 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
MSX2P35548 MIR183-201ENST00000384958 110 ntBASIC2.92□□□□□ -1.94
MSX2P35548 RNU6-381P-201ENST00000391259 108 ntBASIC2.92□□□□□ -1.94
MSX2P35548 CYCSP35-201ENST00000451978 304 ntBASIC2.92□□□□□ -1.94
MSX2P35548 RN7SL293P-201ENST00000481765 281 ntBASIC2.92□□□□□ -1.94
MSX2P35548 RN7SL633P-201ENST00000488974 297 ntBASIC2.92□□□□□ -1.94
MSX2P35548 SEM1P1-201ENST00000506694 209 ntBASIC2.92□□□□□ -1.94
MSX2P35548 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX2P35548 AC136628.3-201ENST00000521868 290 ntBASIC2.92□□□□□ -1.94
MSX2P35548 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX2P35548 AC027176.1-201ENST00000560204 514 ntBASIC2.92□□□□□ -1.94
MSX2P35548 MIR5006-201ENST00000583027 110 ntBASIC2.92□□□□□ -1.94
MSX2P35548 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.92□□□□□ -1.94
MSX2P35548 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
MSX2P35548 Y_RNA.182-201ENST00000363880 111 ntBASIC2.91□□□□□ -1.94
MSX2P35548 Y_RNA.361-201ENST00000365515 120 ntBASIC2.91□□□□□ -1.94
MSX2P35548 RNU6-449P-201ENST00000383914 107 ntBASIC2.91□□□□□ -1.94
MSX2P35548 MIR218-2-201ENST00000385006 110 ntBASIC2.91□□□□□ -1.94
MSX2P35548 RNU6-131P-201ENST00000391144 107 ntBASIC2.91□□□□□ -1.94
MSX2P35548 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.91□□□□□ -1.94
MSX2P35548 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.91□□□□□ -1.94
MSX2P35548 TOMM22P2-201ENST00000430735 237 ntBASIC2.91□□□□□ -1.94
MSX2P35548 SEPT7P4-201ENST00000437076 306 ntBASIC2.91□□□□□ -1.94
MSX2P35548 RPS29P6-201ENST00000438196 145 ntBASIC2.91□□□□□ -1.94
MSX2P35548 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.91□□□□□ -1.94
MSX2P35548 AC006445.1-201ENST00000491925 405 ntBASIC2.91□□□□□ -1.94
MSX2P35548 AC005840.1-201ENST00000498412 377 ntBASIC2.91□□□□□ -1.94
MSX2P35548 RNU1-117P-201ENST00000517041 158 ntBASIC2.91□□□□□ -1.94
MSX2P35548 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.91□□□□□ -1.94
MSX2P35548 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms