Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Y_RNA.638-201ENST00000459374 113 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 RPL26P26-201ENST00000480251 434 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 RPS29P25-201ENST00000481709 171 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.3□□□□□ -2.2
SHMT2P34897 RNU6-864P-201ENST00000516256 108 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 RNU6-948P-201ENST00000516374 107 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 RNU6-344P-201ENST00000516635 111 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.3□□□□□ -2.2
SHMT2P34897 AC084364.2-201ENST00000546924 395 ntBASIC1.3□□□□□ -2.2
SHMT2P34897 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.3□□□□□ -2.2
SHMT2P34897 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.3□□□□□ -2.2
SHMT2P34897 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.3□□□□□ -2.2
SHMT2P34897 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.3□□□□□ -2.2
SHMT2P34897 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.3□□□□□ -2.2
SHMT2P34897 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.3□□□□□ -2.2
SHMT2P34897 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SHMT2P34897 snoU2-30.2-201ENST00000362805 70 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 SNORA33-201ENST00000363664 130 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 RNU6-1305P-201ENST00000364353 104 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 RNU4-12P-201ENST00000365233 139 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.29□□□□□ -2.2
SHMT2P34897 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.29□□□□□ -2.2
SHMT2P34897 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.29□□□□□ -2.2
SHMT2P34897 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.29□□□□□ -2.2
SHMT2P34897 HMGN2P34-201ENST00000437647 269 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 RNU1-123P-201ENST00000458950 160 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 AC108729.3-201ENST00000513484 108 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.29□□□□□ -2.2
SHMT2P34897 AC027288.2-201ENST00000553028 243 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.29□□□□□ -2.2
SHMT2P34897 MIR4498-201ENST00000577599 66 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 SNORA77B-201ENST00000578179 125 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 PRR13P7-201ENST00000605538 430 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 AC124303.1-201ENST00000605703 360 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 U4.5-201ENST00000617137 123 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 AC009033.1-201ENST00000624279 431 ntBASIC1.29□□□□□ -2.2
SHMT2P34897 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.29□□□□□ -2.2
SHMT2P34897 RNU6-414P-201ENST00000363705 104 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 RNU6-245P-201ENST00000384020 107 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 RNU6-306P-201ENST00000384617 107 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 MIR32-201ENST00000384965 70 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 MIR320B2-201ENST00000408479 138 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC004965.1-201ENST00000413033 213 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC016909.1-201ENST00000415916 166 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.28□□□□□ -2.2
SHMT2P34897 RPL30P10-201ENST00000488148 337 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.28□□□□□ -2.2
SHMT2P34897 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 ACA59.1-201ENST00000515966 143 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 RNA5SP54-201ENST00000516951 92 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC019193.3-201ENST00000609144 554 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AC090517.2-201ENST00000614966 680 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 AL078596.1-201ENST00000624856 447 ntBASIC1.28□□□□□ -2.2
SHMT2P34897 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SHMT2P34897 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
SHMT2P34897 AL391987.6-201ENST00000305671 199 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MIR302D-201ENST00000362275 68 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 Y_RNA.157-201ENST00000363638 102 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 Y_RNA.295-201ENST00000364918 102 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 Y_RNA.319-201ENST00000365138 92 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RNU6-831P-201ENST00000384548 107 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MIR758-201ENST00000390227 88 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MIR1267-201ENST00000408723 78 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RNA5SP118-201ENST00000410385 109 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RNU6-57P-201ENST00000411348 103 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RPL23AP36-201ENST00000413895 458 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.27□□□□□ -2.21
SHMT2P34897 AC243428.1-201ENST00000421099 264 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MTCO3P29-201ENST00000432119 779 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AC092473.1-201ENST00000441098 221 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 JTBP1-201ENST00000441314 247 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.27□□□□□ -2.21
SHMT2P34897 RNU7-57P-201ENST00000459540 60 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 HMGN1P13-201ENST00000505795 138 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RNU6-1088P-201ENST00000516850 104 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 RNU1-117P-201ENST00000517041 158 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AL160236.1-201ENST00000556317 195 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MIR5696-201ENST00000578474 85 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.27□□□□□ -2.21
SHMT2P34897 AC016727.1-205ENST00000605437 569 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AL157834.3-201ENST00000615543 103 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AL353770.2-201ENST00000620024 78 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AC006504.8-201ENST00000621046 635 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AC006001.4-201ENST00000622243 395 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 MIR3688-2-201ENST00000636963 87 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 AC100810.6-201ENST00000638068 285 ntBASIC1.27□□□□□ -2.21
SHMT2P34897 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
SHMT2P34897 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.27□□□□□ -2.21
SHMT2P34897 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.27□□□□□ -2.21
SHMT2P34897 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.26□□□□□ -2.21
SHMT2P34897 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
SHMT2P34897 Y_RNA.338-201ENST00000365320 114 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNU6-1215P-201ENST00000384441 102 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 MIR153-2-201ENST00000385225 87 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNU6-360P-201ENST00000390944 104 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 RNU2-7P-201ENST00000410794 178 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AL161935.2-201ENST00000414627 60 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 EBAG9P1-201ENST00000418955 543 ntBASIC1.26□□□□□ -2.21
SHMT2P34897 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.26□□□□□ -2.21
SHMT2P34897 MTATP6P13-201ENST00000438531 667 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms