Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXC9P31274 MIR5006-201ENST00000583027 110 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 AC022202.1-201ENST00000613515 211 ntBASIC2.23□□□□□ -2.05
HOXC9P31274 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXC9P31274 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
HOXC9P31274 Y_RNA.813-201ENST00000364639 102 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 Y_RNA.315-201ENST00000365117 102 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 Y_RNA.431-201ENST00000384086 102 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 Y_RNA.460-201ENST00000384255 102 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 RNU6-1156P-201ENST00000410365 100 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 AL035666.1-201ENST00000446195 348 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 MTCO3P8-201ENST00000453691 755 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 RNU7-14P-201ENST00000459331 62 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 RNU7-169P-201ENST00000459456 61 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXC9P31274 HMGN1P13-201ENST00000505795 138 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 Y_RNA.661-201ENST00000516003 99 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 RNU2-44P-201ENST00000516795 194 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 AC034114.1-201ENST00000520293 285 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 ANP32BP3-201ENST00000559213 706 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC9P31274 MIR5695-201ENST00000579717 85 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 AL645939.4-201ENST00000604495 135 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 AL359821.1-201ENST00000605519 182 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 SNORD14A-201ENST00000606526 91 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXC9P31274 MTND5P16-201ENST00000460269 1703 ntBASIC2.22□□□□□ -2.05
HOXC9P31274 MIR369-201ENST00000362155 70 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNU6-490P-201ENST00000362985 107 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNU6-873P-201ENST00000363833 107 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNY3P11-201ENST00000364153 102 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 Y_RNA.226-201ENST00000364337 114 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 Y_RNA.314-201ENST00000365114 102 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 Y_RNA.358-201ENST00000365491 99 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNU1-148P-201ENST00000384472 162 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNU2-48P-201ENST00000410694 191 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNA5SP489-201ENST00000410986 109 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC9P31274 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC9P31274 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC9P31274 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXC9P31274 AC132942.1-201ENST00000486753 483 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RPS23P5-201ENST00000495419 428 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AC005840.1-201ENST00000498412 377 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 ATP5EP1-201ENST00000510257 156 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNU6-1170P-201ENST00000515974 106 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 SNORA25.14-201ENST00000516481 132 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 RNA5SP490-201ENST00000517141 136 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC9P31274 SUB1P3-201ENST00000564581 315 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AC009127.3-201ENST00000570531 403 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 MIR3126-201ENST00000577443 74 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 SNRPGP20-201ENST00000604477 205 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AL359314.1-201ENST00000616913 261 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AL132822.1-201ENST00000617063 513 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 AL160413.1-201ENST00000622780 310 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 MIR203B-201ENST00000636080 86 ntBASIC2.21□□□□□ -2.06
HOXC9P31274 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC9P31274 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXC9P31274 SNORD115-3-201ENST00000363100 82 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 SNORD48-201ENST00000364953 64 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 Y_RNA.394-201ENST00000383942 103 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 RNU6-1026P-201ENST00000384465 108 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 Y_RNA.577-201ENST00000384794 101 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 MIR625-201ENST00000385047 85 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 MIR320B2-201ENST00000408479 138 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC9P31274 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC9P31274 AC007215.1-201ENST00000464893 276 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 RNA5SP54-201ENST00000516951 92 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 CYCSP26-201ENST00000534107 320 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXC9P31274 AC026470.2-201ENST00000561492 181 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC9P31274 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.2□□□□□ -2.06
HOXC9P31274 TCL6_2.1-201ENST00000615162 119 ntBASIC2.2□□□□□ -2.06
HOXC9P31274 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HOXC9P31274 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HOXC9P31274 RNU6-1115P-201ENST00000362490 106 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 SNORA3A-201ENST00000364113 130 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 Y_RNA.364-201ENST00000365532 101 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 Y_RNA.463-201ENST00000384271 102 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 AL357139.1-201ENST00000407792 426 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 AC004866.1-201ENST00000411748 78 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXC9P31274 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXC9P31274 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXC9P31274 PRELID3BP1-201ENST00000457142 540 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 U8.22-201ENST00000459141 133 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 RNU6-1198P-201ENST00000516904 67 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 RNU1-117P-201ENST00000517041 158 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXC9P31274 MIR3935-201ENST00000583472 104 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXC9P31274 AC090971.5-201ENST00000621102 293 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 BX322639.1-202ENST00000423987 2213 ntBASIC2.19□□□□□ -2.06
HOXC9P31274 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
HOXC9P31274 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms