Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.85□□□□□ -1.95
SMARCA1P28370 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SMARCA1P28370 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.84□□□□□ -1.95
SMARCA1P28370 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SMARCA1P28370 Y_RNA.143-201ENST00000363520 106 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 MIR95-201ENST00000385072 81 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 MRPL35P1-201ENST00000404272 572 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.84□□□□□ -1.95
SMARCA1P28370 AL161788.1-201ENST00000441805 169 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 IPO7P1-201ENST00000442031 636 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 SNORA40.9-201ENST00000515895 93 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 Y_RNA.683-201ENST00000516508 93 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 SNORA40.15-201ENST00000516884 107 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 RRN3P3-201ENST00000549207 578 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 Y_RNA.772-201ENST00000606692 102 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 AC130454.1-201ENST00000622948 401 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 MIR203B-201ENST00000636080 86 ntBASIC2.84□□□□□ -1.95
SMARCA1P28370 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
SMARCA1P28370 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
SMARCA1P28370 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
SMARCA1P28370 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
SMARCA1P28370 RNU4-82P-201ENST00000362443 140 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 RNU6-961P-201ENST00000363893 105 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 SNORA25.6-201ENST00000364121 118 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 Y_RNA.595-201ENST00000410403 105 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 RNU2-20P-201ENST00000410425 191 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 AL731563.1-201ENST00000442202 214 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 AC007395.1-201ENST00000451333 677 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 PCNPP5-201ENST00000452246 481 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.83□□□□□ -1.96
SMARCA1P28370 RNU6-1098P-201ENST00000516772 96 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 MIR5006-201ENST00000583027 110 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 MIR1291-201ENST00000627649 87 ntBASIC2.83□□□□□ -1.96
SMARCA1P28370 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SMARCA1P28370 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SMARCA1P28370 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
SMARCA1P28370 SNORA38-201ENST00000363946 132 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 SNORA67.1-201ENST00000364749 141 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 MIR320B2-201ENST00000408479 138 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 RNA5SP504-201ENST00000410676 117 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 AC007064.1-201ENST00000412238 351 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.82□□□□□ -1.96
SMARCA1P28370 IFNA11P-201ENST00000446352 526 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.82□□□□□ -1.96
SMARCA1P28370 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.82□□□□□ -1.96
SMARCA1P28370 AC098869.1-201ENST00000481627 292 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 RNU6-408P-201ENST00000515910 100 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.82□□□□□ -1.96
SMARCA1P28370 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.82□□□□□ -1.96
SMARCA1P28370 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.82□□□□□ -1.96
SMARCA1P28370 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.82□□□□□ -1.96
SMARCA1P28370 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 MIR8062-201ENST00000621515 85 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 IGHVIII-44-202ENST00000636235 289 ntBASIC2.82□□□□□ -1.96
SMARCA1P28370 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
SMARCA1P28370 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
SMARCA1P28370 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
SMARCA1P28370 RNU5F-3P-201ENST00000363767 117 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 Y_RNA.193-201ENST00000363979 102 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 Y_RNA.415-201ENST00000384012 112 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 SNORA67.2-201ENST00000384300 149 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 RNU6-937P-201ENST00000384325 106 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AL033519.2-201ENST00000403958 392 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 MIR1294-201ENST00000408503 142 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 ELOCP21-201ENST00000412558 336 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 RPL21P38-201ENST00000418090 167 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 CBX3P6-201ENST00000430257 527 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AC009237.7-201ENST00000447357 229 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 Y_RNA.713-201ENST00000517013 96 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.81□□□□□ -1.96
SMARCA1P28370 AK6P2-201ENST00000549020 471 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AL161670.1-201ENST00000554348 137 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 MIR4300-201ENST00000581016 96 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 MIR3149-201ENST00000584629 83 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AL355297.2-201ENST00000604792 129 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AC103810.6-201ENST00000606708 136 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 AC067747.1-201ENST00000608026 250 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 U4atac.1-201ENST00000618345 95 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.81□□□□□ -1.96
SMARCA1P28370 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
SMARCA1P28370 RNU6-626P-201ENST00000363354 107 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 RNU1-23P-201ENST00000363361 144 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 Y_RNA.452-201ENST00000384202 108 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 SNORD115-46-201ENST00000390982 71 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.8□□□□□ -1.96
SMARCA1P28370 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.8□□□□□ -1.96
SMARCA1P28370 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.8□□□□□ -1.96
SMARCA1P28370 AC011753.1-201ENST00000451001 220 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC025465.3-201ENST00000510570 311 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.8□□□□□ -1.96
SMARCA1P28370 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.8□□□□□ -1.96
SMARCA1P28370 RNU6-344P-201ENST00000516635 111 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 RNA5SP82-201ENST00000516707 92 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC018630.3-201ENST00000542637 96 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC018448.1-201ENST00000552843 316 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AC233702.2-202ENST00000562547 291 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.8□□□□□ -1.96
SMARCA1P28370 AC055872.1-201ENST00000570978 278 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 AP000942.4-201ENST00000604811 241 ntBASIC2.8□□□□□ -1.96
SMARCA1P28370 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms