Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.36□□□□□ -2.35
HLA-DMBP28068 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.36□□□□□ -2.35
HLA-DMBP28068 ZNF114P1-201ENST00000453500 292 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 RNU7-167P-201ENST00000459160 62 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 RNU6-917P-201ENST00000516294 104 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.36□□□□□ -2.35
HLA-DMBP28068 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.36□□□□□ -2.35
HLA-DMBP28068 MTND1P8-201ENST00000571424 950 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 MIR4711-201ENST00000578274 70 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 AL022161.1-201ENST00000604390 213 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 RNU6-85P-201ENST00000605989 107 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 AC006566.1-201ENST00000608943 513 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 AC007742.2-201ENST00000618226 398 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.36□□□□□ -2.35
HLA-DMBP28068 AC010608.3-201ENST00000625048 527 ntBASIC0.36□□□□□ -2.35
HLA-DMBP28068 RNU6-227P-201ENST00000362865 103 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 SNORD114-23-201ENST00000363536 72 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 SNORD116-13-201ENST00000384408 92 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 MIR620-201ENST00000385232 95 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
HLA-DMBP28068 AL355796.1-201ENST00000406706 323 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AL354692.1-201ENST00000423044 315 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.35□□□□□ -2.35
HLA-DMBP28068 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.35□□□□□ -2.35
HLA-DMBP28068 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.35□□□□□ -2.35
HLA-DMBP28068 RPEP5-201ENST00000441137 268 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 RPL39P39-201ENST00000455840 151 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AL049830.1-201ENST00000468034 425 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 RNU6-947P-201ENST00000516264 106 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 RNU6-612P-201ENST00000516909 102 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 MTND2P32-201ENST00000521584 1038 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 ELOCP32-201ENST00000548625 324 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AC018659.1-201ENST00000551083 169 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 MIR4778-201ENST00000577635 80 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AC025449.1-201ENST00000603896 529 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AC012557.2-201ENST00000605919 418 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 ELL2P3-201ENST00000457883 1602 ntBASIC0.35□□□□□ -2.35
HLA-DMBP28068 AC023934.1-201ENST00000574529 2389 ntBASIC0.34□□□□□ -2.35
HLA-DMBP28068 SNORA2.2-201ENST00000365473 135 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 RNU6-1286P-201ENST00000383871 107 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 MIR10B-201ENST00000385011 110 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 AC025465.4-201ENST00000513422 638 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 RNU6-496P-201ENST00000516145 99 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 RNU6-311P-201ENST00000516224 102 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 RNU6-344P-201ENST00000516635 111 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 AP003461.1-201ENST00000528866 78 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 SNRPGP20-201ENST00000604477 205 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 U6.73-201ENST00000619194 103 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 AL078596.1-201ENST00000624856 447 ntBASIC0.34□□□□□ -2.36
HLA-DMBP28068 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.34□□□□□ -2.36
HLA-DMBP28068 MTND4P4-201ENST00000439033 1366 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 AP000568.1-201ENST00000282964 442 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
HLA-DMBP28068 RNY4P34-201ENST00000364779 95 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.33□□□□□ -2.36
HLA-DMBP28068 RNA5SP193-201ENST00000410353 107 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 RNA5SP494-201ENST00000410653 129 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.33□□□□□ -2.36
HLA-DMBP28068 AC245047.8-201ENST00000456455 284 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 AC022364.2-201ENST00000457963 554 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 MTND2P14-201ENST00000482139 351 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 RNU7-99P-201ENST00000516271 62 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 AP002001.1-203ENST00000534002 267 ntBASIC0.33□□□□□ -2.36
HLA-DMBP28068 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.33□□□□□ -2.36
HLA-DMBP28068 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.33□□□□□ -2.36
HLA-DMBP28068 RNU6-1335P-201ENST00000365426 107 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 RNU6-606P-201ENST00000384721 111 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 MIR193B-201ENST00000384907 83 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 MIR7-2-201ENST00000384970 110 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 RNU6-1106P-201ENST00000390845 107 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 RNU2-29P-201ENST00000410423 189 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 MTCO2P7-201ENST00000446518 666 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 RNU6-1037P-201ENST00000459571 107 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 RNU7-94P-201ENST00000459576 63 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC022493.2-201ENST00000506122 481 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 RPL39P5-202ENST00000512505 151 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC105417.1-201ENST00000514691 285 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DMBP28068 MTND1P15-201ENST00000579262 949 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 SNORA28-201ENST00000606769 126 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC004832.4-201ENST00000608952 331 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AL391903.3-201ENST00000612158 163 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC243829.6-201ENST00000612652 106 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AC068792.1-201ENST00000621354 417 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AP000720.1-201ENST00000625091 483 ntBASIC0.32□□□□□ -2.36
HLA-DMBP28068 AL589743.1-201ENST00000551932 2712 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms