Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MTCO1P29-201ENST00000496868 288 ntBASIC0.95□□□□□ -2.26
USF1P22415 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.95□□□□□ -2.26
USF1P22415 AC091133.4-201ENST00000511142 308 ntBASIC0.95□□□□□ -2.26
USF1P22415 RNU6-344P-201ENST00000516635 111 ntBASIC0.95□□□□□ -2.26
USF1P22415 RN7SKP88-201ENST00000516847 250 ntBASIC0.95□□□□□ -2.26
USF1P22415 MTND1P35-201ENST00000526739 508 ntBASIC0.95□□□□□ -2.26
USF1P22415 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.95□□□□□ -2.26
USF1P22415 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.95□□□□□ -2.26
USF1P22415 MIR3664-201ENST00000579074 99 ntBASIC0.95□□□□□ -2.26
USF1P22415 7SK.8-201ENST00000612110 250 ntBASIC0.95□□□□□ -2.26
USF1P22415 7SK.11-201ENST00000615477 250 ntBASIC0.95□□□□□ -2.26
USF1P22415 7SK.13-201ENST00000622040 250 ntBASIC0.95□□□□□ -2.26
USF1P22415 AC008873.1-201ENST00000625051 138 ntBASIC0.95□□□□□ -2.26
USF1P22415 snoZ196.1-201ENST00000625269 89 ntBASIC0.95□□□□□ -2.26
USF1P22415 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
USF1P22415 RNU6-1322P-201ENST00000364309 107 ntBASIC0.94□□□□□ -2.26
USF1P22415 SNORA70.7-201ENST00000384159 133 ntBASIC0.94□□□□□ -2.26
USF1P22415 RNU6-933P-201ENST00000384424 107 ntBASIC0.94□□□□□ -2.26
USF1P22415 MIR521-1-201ENST00000384902 87 ntBASIC0.94□□□□□ -2.26
USF1P22415 RNA5SP109-201ENST00000391010 116 ntBASIC0.94□□□□□ -2.26
USF1P22415 Y_RNA.582-201ENST00000391023 95 ntBASIC0.94□□□□□ -2.26
USF1P22415 EIF4E2P1-201ENST00000393781 255 ntBASIC0.94□□□□□ -2.26
USF1P22415 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.94□□□□□ -2.26
USF1P22415 AL591704.2-201ENST00000421658 181 ntBASIC0.94□□□□□ -2.26
USF1P22415 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.94□□□□□ -2.26
USF1P22415 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.94□□□□□ -2.26
USF1P22415 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.94□□□□□ -2.26
USF1P22415 PGBD4P5-201ENST00000445958 426 ntBASIC0.94□□□□□ -2.26
USF1P22415 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.94□□□□□ -2.26
USF1P22415 RPS29P29-201ENST00000456396 171 ntBASIC0.94□□□□□ -2.26
USF1P22415 RNU6-1208P-201ENST00000459588 107 ntBASIC0.94□□□□□ -2.26
USF1P22415 SRRM1P2-201ENST00000464531 1192 ntBASIC0.94□□□□□ -2.26
USF1P22415 RPS23P4-201ENST00000487908 423 ntBASIC0.94□□□□□ -2.26
USF1P22415 AL133373.1-201ENST00000497098 94 ntBASIC0.94□□□□□ -2.26
USF1P22415 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.94□□□□□ -2.26
USF1P22415 AC104383.1-201ENST00000530297 370 ntBASIC0.94□□□□□ -2.26
USF1P22415 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
USF1P22415 AL137100.2-201ENST00000555786 315 ntBASIC0.94□□□□□ -2.26
USF1P22415 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.94□□□□□ -2.26
USF1P22415 AC092807.2-201ENST00000609367 243 ntBASIC0.94□□□□□ -2.26
USF1P22415 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.94□□□□□ -2.26
USF1P22415 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.94□□□□□ -2.26
USF1P22415 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.94□□□□□ -2.26
USF1P22415 RNU6-1240P-201ENST00000365155 104 ntBASIC0.93□□□□□ -2.26
USF1P22415 MIR613-201ENST00000385248 95 ntBASIC0.93□□□□□ -2.26
USF1P22415 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
USF1P22415 MTCO2P16-201ENST00000436962 677 ntBASIC0.93□□□□□ -2.26
USF1P22415 RNU6-221P-201ENST00000459541 99 ntBASIC0.93□□□□□ -2.26
USF1P22415 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.93□□□□□ -2.26
USF1P22415 RPL23AP75-201ENST00000491601 451 ntBASIC0.93□□□□□ -2.26
USF1P22415 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.93□□□□□ -2.26
USF1P22415 RNU7-40P-201ENST00000516397 64 ntBASIC0.93□□□□□ -2.26
USF1P22415 RNU6-113P-201ENST00000516653 101 ntBASIC0.93□□□□□ -2.26
USF1P22415 RNU1-142P-201ENST00000516682 145 ntBASIC0.93□□□□□ -2.26
USF1P22415 RNA5SP54-201ENST00000516951 92 ntBASIC0.93□□□□□ -2.26
USF1P22415 AC025647.1-201ENST00000517879 253 ntBASIC0.93□□□□□ -2.26
USF1P22415 AC016957.1-201ENST00000534895 309 ntBASIC0.93□□□□□ -2.26
USF1P22415 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.93□□□□□ -2.26
USF1P22415 AC146944.4-201ENST00000602697 718 ntBASIC0.93□□□□□ -2.26
USF1P22415 AL929325.1-201ENST00000603096 117 ntBASIC0.93□□□□□ -2.26
USF1P22415 AC097065.2-201ENST00000608159 533 ntBASIC0.93□□□□□ -2.26
USF1P22415 AC021506.2-201ENST00000612354 169 ntBASIC0.93□□□□□ -2.26
USF1P22415 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.93□□□□□ -2.26
USF1P22415 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.93□□□□□ -2.26
USF1P22415 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.93□□□□□ -2.26
USF1P22415 ZNF204P-201ENST00000416749 2397 ntBASIC0.93□□□□□ -2.26
USF1P22415 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
USF1P22415 RNU4-20P-201ENST00000365601 151 ntBASIC0.92□□□□□ -2.26
USF1P22415 SNORA69-201ENST00000383895 132 ntBASIC0.92□□□□□ -2.26
USF1P22415 SNORA22-201ENST00000383907 134 ntBASIC0.92□□□□□ -2.26
USF1P22415 SNORD116-8-201ENST00000384365 95 ntBASIC0.92□□□□□ -2.26
USF1P22415 Y_RNA.481-201ENST00000384373 102 ntBASIC0.92□□□□□ -2.26
USF1P22415 SNORA22C-201ENST00000384614 134 ntBASIC0.92□□□□□ -2.26
USF1P22415 AC016909.1-201ENST00000415916 166 ntBASIC0.92□□□□□ -2.26
USF1P22415 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.92□□□□□ -2.26
USF1P22415 DYNLT3P2-201ENST00000442517 295 ntBASIC0.92□□□□□ -2.26
USF1P22415 RPS29P28-201ENST00000446439 141 ntBASIC0.92□□□□□ -2.26
USF1P22415 RPS27P1-201ENST00000450552 247 ntBASIC0.92□□□□□ -2.26
USF1P22415 RNA5SP404-201ENST00000517118 132 ntBASIC0.92□□□□□ -2.26
USF1P22415 RNU6-1223P-201ENST00000517124 104 ntBASIC0.92□□□□□ -2.26
USF1P22415 AC007834.2-201ENST00000536310 343 ntBASIC0.92□□□□□ -2.26
USF1P22415 TPRKBP2-201ENST00000565969 475 ntBASIC0.92□□□□□ -2.26
USF1P22415 MIR151B-201ENST00000584249 96 ntBASIC0.92□□□□□ -2.26
USF1P22415 AL359075.3-201ENST00000613288 217 ntBASIC0.92□□□□□ -2.26
USF1P22415 MIR6788-201ENST00000618842 66 ntBASIC0.92□□□□□ -2.26
USF1P22415 AC078883.4-201ENST00000623218 367 ntBASIC0.92□□□□□ -2.26
USF1P22415 AC121333.1-201ENST00000567488 2709 ntBASIC0.91□□□□□ -2.26
USF1P22415 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.91□□□□□ -2.26
USF1P22415 RNU6-245P-201ENST00000384020 107 ntBASIC0.91□□□□□ -2.26
USF1P22415 Y_RNA.553-201ENST00000384670 102 ntBASIC0.91□□□□□ -2.26
USF1P22415 RNU6-1031P-201ENST00000384773 107 ntBASIC0.91□□□□□ -2.26
USF1P22415 MIR450B-201ENST00000401182 78 ntBASIC0.91□□□□□ -2.26
USF1P22415 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.91□□□□□ -2.26
USF1P22415 RN7SKP200-201ENST00000410564 320 ntBASIC0.91□□□□□ -2.26
USF1P22415 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.91□□□□□ -2.26
USF1P22415 MTCO1P19-201ENST00000443487 500 ntBASIC0.91□□□□□ -2.26
USF1P22415 MTND3P16-201ENST00000452205 344 ntBASIC0.91□□□□□ -2.26
USF1P22415 RPL39P38-201ENST00000467018 153 ntBASIC0.91□□□□□ -2.26
USF1P22415 RNU6-1332P-201ENST00000516666 104 ntBASIC0.91□□□□□ -2.26
USF1P22415 RNU1-117P-201ENST00000517041 158 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 159.3 ms