Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC244505.6-201ENST00000452829 130 ntBASIC-1.53□□□□□ -2.65
VCANP13611 AC245047.8-201ENST00000456455 284 ntBASIC-1.53□□□□□ -2.65
VCANP13611 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-1.53□□□□□ -2.65
VCANP13611 AC080078.2-201ENST00000603766 501 ntBASIC-1.53□□□□□ -2.65
VCANP13611 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.54□□□□□ -2.66
VCANP13611 RPL26P6-201ENST00000440913 438 ntBASIC-1.54□□□□□ -2.66
VCANP13611 RPL39P39-201ENST00000455840 151 ntBASIC-1.54□□□□□ -2.66
VCANP13611 AP002371.2-201ENST00000624450 503 ntBASIC-1.54□□□□□ -2.66
VCANP13611 AC132825.8-201ENST00000640783 297 ntBASIC-1.54□□□□□ -2.66
VCANP13611 RNU6-505P-201ENST00000384427 107 ntBASIC-1.54□□□□□ -2.66
VCANP13611 LINC01399-202ENST00000458450 244 ntBASIC-1.54□□□□□ -2.66
VCANP13611 AGGF1P4-201ENST00000568249 801 ntBASIC-1.54□□□□□ -2.66
VCANP13611 AC004853.1-201ENST00000604902 698 ntBASIC-1.54□□□□□ -2.66
VCANP13611 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC-1.54□□□□□ -2.66
VCANP13611 AC010975.3-201ENST00000618727 978 ntBASIC-1.54□□□□□ -2.66
VCANP13611 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-1.54□□□□□ -2.66
VCANP13611 AC104820.1-201ENST00000624183 307 ntBASIC-1.54□□□□□ -2.66
VCANP13611 RNU6-511P-201ENST00000363496 107 ntBASIC-1.55□□□□□ -2.66
VCANP13611 MTATP6P20-201ENST00000414147 562 ntBASIC-1.55□□□□□ -2.66
VCANP13611 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC-1.55□□□□□ -2.66
VCANP13611 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC-1.55□□□□□ -2.66
VCANP13611 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.55□□□□□ -2.66
VCANP13611 RNU6-1074P-201ENST00000383995 104 ntBASIC-1.55□□□□□ -2.66
VCANP13611 MIR518B-201ENST00000385127 83 ntBASIC-1.55□□□□□ -2.66
VCANP13611 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-1.55□□□□□ -2.66
VCANP13611 RPL37P6-201ENST00000460682 294 ntBASIC-1.55□□□□□ -2.66
VCANP13611 RNA5SP481-201ENST00000516814 122 ntBASIC-1.55□□□□□ -2.66
VCANP13611 HIGD1AP6-201ENST00000521833 279 ntBASIC-1.55□□□□□ -2.66
VCANP13611 AC004223.2-201ENST00000590309 544 ntBASIC-1.55□□□□□ -2.66
VCANP13611 AC010154.1-201ENST00000425857 269 ntBASIC-1.55□□□□□ -2.66
VCANP13611 AC107401.1-201ENST00000503426 685 ntBASIC-1.55□□□□□ -2.66
VCANP13611 FRG1KP-201ENST00000623592 341 ntBASIC-1.55□□□□□ -2.66
VCANP13611 SNORD56B-201ENST00000384713 71 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AL353813.1-201ENST00000440700 253 ntBASIC-1.56□□□□□ -2.66
VCANP13611 MTND2P4-201ENST00000445034 1004 ntBASIC-1.56□□□□□ -2.66
VCANP13611 RNU6-504P-201ENST00000516568 104 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC-1.56□□□□□ -2.66
VCANP13611 MIR378D2-201ENST00000580636 98 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AC084368.1-201ENST00000620935 65 ntBASIC-1.56□□□□□ -2.66
VCANP13611 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-1.56□□□□□ -2.66
VCANP13611 Y_RNA.174-201ENST00000363781 105 ntBASIC-1.56□□□□□ -2.66
VCANP13611 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-1.56□□□□□ -2.66
VCANP13611 TPT1P7-201ENST00000458300 517 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AC007014.2-201ENST00000615581 479 ntBASIC-1.56□□□□□ -2.66
VCANP13611 NEAT1_2.1-201ENST00000620525 105 ntBASIC-1.56□□□□□ -2.66
VCANP13611 SNORA72.1-201ENST00000363485 129 ntBASIC-1.56□□□□□ -2.66
VCANP13611 RNU6-374P-201ENST00000364146 108 ntBASIC-1.56□□□□□ -2.66
VCANP13611 RNU6-754P-201ENST00000391166 107 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AL445193.1-201ENST00000441183 141 ntBASIC-1.56□□□□□ -2.66
VCANP13611 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC-1.56□□□□□ -2.66
VCANP13611 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC-1.56□□□□□ -2.66
VCANP13611 HMGB1P51-201ENST00000605166 638 ntBASIC-1.56□□□□□ -2.66
VCANP13611 RNU6-28P-201ENST00000362378 107 ntBASIC-1.57□□□□□ -2.66
VCANP13611 SNORD113.3-201ENST00000364630 78 ntBASIC-1.57□□□□□ -2.66
VCANP13611 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.57□□□□□ -2.66
VCANP13611 ELOCP11-201ENST00000436690 332 ntBASIC-1.57□□□□□ -2.66
VCANP13611 ELOCP16-201ENST00000444494 332 ntBASIC-1.57□□□□□ -2.66
VCANP13611 ART2BP-201ENST00000453501 499 ntBASIC-1.57□□□□□ -2.66
VCANP13611 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-1.57□□□□□ -2.66
VCANP13611 RNU6-798P-201ENST00000516912 103 ntBASIC-1.57□□□□□ -2.66
VCANP13611 AC134878.1-201ENST00000619901 243 ntBASIC-1.57□□□□□ -2.66
VCANP13611 RNU6-369P-201ENST00000362515 102 ntBASIC-1.58□□□□□ -2.66
VCANP13611 RNA5SP391-201ENST00000363456 119 ntBASIC-1.58□□□□□ -2.66
VCANP13611 Y_RNA.302-201ENST00000364997 102 ntBASIC-1.58□□□□□ -2.66
VCANP13611 RNU2-46P-201ENST00000517038 113 ntBASIC-1.58□□□□□ -2.66
VCANP13611 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.58□□□□□ -2.66
VCANP13611 MIR5695-201ENST00000579717 85 ntBASIC-1.58□□□□□ -2.66
VCANP13611 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC-1.58□□□□□ -2.66
VCANP13611 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC-1.58□□□□□ -2.66
VCANP13611 AC113398.2-201ENST00000507630 558 ntBASIC-1.58□□□□□ -2.66
VCANP13611 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC-1.58□□□□□ -2.66
VCANP13611 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC-1.58□□□□□ -2.66
VCANP13611 AC107952.2-201ENST00000606048 486 ntBASIC-1.58□□□□□ -2.66
VCANP13611 AL590396.2-201ENST00000636511 1041 ntBASIC-1.58□□□□□ -2.66
VCANP13611 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.58□□□□□ -2.66
VCANP13611 RNU6-331P-201ENST00000384724 107 ntBASIC-1.58□□□□□ -2.66
VCANP13611 MIR301A-201ENST00000385261 86 ntBASIC-1.58□□□□□ -2.66
VCANP13611 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-1.58□□□□□ -2.66
VCANP13611 RNU6-123P-201ENST00000516163 102 ntBASIC-1.58□□□□□ -2.66
VCANP13611 AC009268.1-201ENST00000561352 1203 ntBASIC-1.58□□□□□ -2.66
VCANP13611 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC-1.59□□□□□ -2.66
VCANP13611 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC-1.59□□□□□ -2.66
VCANP13611 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.59□□□□□ -2.66
VCANP13611 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.59□□□□□ -2.66
VCANP13611 RNU6-455P-201ENST00000384681 107 ntBASIC-1.59□□□□□ -2.66
VCANP13611 RNU4-27P-201ENST00000410889 139 ntBASIC-1.59□□□□□ -2.66
VCANP13611 Y_RNA.695-201ENST00000516715 107 ntBASIC-1.59□□□□□ -2.66
VCANP13611 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-1.59□□□□□ -2.66
VCANP13611 AC107075.1-201ENST00000613695 314 ntBASIC-1.59□□□□□ -2.66
VCANP13611 RNU6-230P-201ENST00000362457 104 ntBASIC-1.59□□□□□ -2.66
VCANP13611 Y_RNA.481-201ENST00000384373 102 ntBASIC-1.59□□□□□ -2.66
VCANP13611 ELOCP9-201ENST00000418624 239 ntBASIC-1.59□□□□□ -2.66
VCANP13611 AL929288.2-201ENST00000446368 407 ntBASIC-1.59□□□□□ -2.66
VCANP13611 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-1.59□□□□□ -2.66
VCANP13611 BNIP3P6-201ENST00000549284 499 ntBASIC-1.59□□□□□ -2.66
VCANP13611 MIR4677-201ENST00000584153 80 ntBASIC-1.59□□□□□ -2.66
VCANP13611 MTND3P19-201ENST00000603825 345 ntBASIC-1.59□□□□□ -2.66
VCANP13611 AC005609.4-201ENST00000625071 447 ntBASIC-1.59□□□□□ -2.66
VCANP13611 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.6□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms