Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SNORD48-201ENST00000364953 64 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU6-975P-201ENST00000384296 105 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU6-1235P-201ENST00000384559 107 ntBASIC1.75□□□□□ -2.13
SIX3O95343 MIR583-201ENST00000384846 75 ntBASIC1.75□□□□□ -2.13
SIX3O95343 MIR9-3-201ENST00000385084 90 ntBASIC1.75□□□□□ -2.13
SIX3O95343 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SIX3O95343 HMGN2P34-201ENST00000437647 269 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU6-498P-201ENST00000459468 107 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU7-57P-201ENST00000459540 60 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AC010409.1-201ENST00000487382 476 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.75□□□□□ -2.13
SIX3O95343 Y_RNA.682-201ENST00000516457 100 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU6-1088P-201ENST00000516850 104 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.75□□□□□ -2.13
SIX3O95343 SUB1P4-201ENST00000566062 339 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AC010928.2-201ENST00000588017 287 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AC012493.3-201ENST00000604494 112 ntBASIC1.75□□□□□ -2.13
SIX3O95343 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.75□□□□□ -2.13
SIX3O95343 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.75□□□□□ -2.13
SIX3O95343 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.75□□□□□ -2.13
SIX3O95343 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SIX3O95343 RNU6-661P-201ENST00000362409 107 ntBASIC1.74□□□□□ -2.13
SIX3O95343 RNU6-245P-201ENST00000384020 107 ntBASIC1.74□□□□□ -2.13
SIX3O95343 MIR586-201ENST00000385035 97 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC007098.1-201ENST00000420122 367 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.74□□□□□ -2.13
SIX3O95343 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.74□□□□□ -2.13
SIX3O95343 MTCO3P29-201ENST00000432119 779 ntBASIC1.74□□□□□ -2.13
SIX3O95343 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.74□□□□□ -2.13
SIX3O95343 HMGN2P9-201ENST00000476875 229 ntBASIC1.74□□□□□ -2.13
SIX3O95343 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.74□□□□□ -2.13
SIX3O95343 RNA5SP384-201ENST00000516615 116 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.74□□□□□ -2.13
SIX3O95343 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.74□□□□□ -2.13
SIX3O95343 MIR3198-2-201ENST00000577868 80 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.74□□□□□ -2.13
SIX3O95343 MIR4452-201ENST00000583004 71 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC018638.8-201ENST00000588755 281 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC103810.8-201ENST00000607347 118 ntBASIC1.74□□□□□ -2.13
SIX3O95343 MIR8074-201ENST00000615081 81 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC007014.2-201ENST00000615581 479 ntBASIC1.74□□□□□ -2.13
SIX3O95343 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC002553.4-201ENST00000616896 331 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC009248.2-201ENST00000619826 254 ntBASIC1.74□□□□□ -2.13
SIX3O95343 PVT1_3.1-201ENST00000620853 95 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC068137.4-201ENST00000638485 296 ntBASIC1.74□□□□□ -2.13
SIX3O95343 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.74□□□□□ -2.13
SIX3O95343 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
SIX3O95343 AC010615.1-201ENST00000594254 1764 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-112P-201ENST00000363599 104 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-280P-201ENST00000364145 104 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-1019P-201ENST00000364424 107 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-439P-201ENST00000384188 106 ntBASIC1.73□□□□□ -2.13
SIX3O95343 U8.10-201ENST00000384260 133 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-342P-201ENST00000384521 104 ntBASIC1.73□□□□□ -2.13
SIX3O95343 Y_RNA.533-201ENST00000384596 114 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNA5SP323-201ENST00000391094 133 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC060773.1-201ENST00000421698 310 ntBASIC1.73□□□□□ -2.13
SIX3O95343 USMG5P1-201ENST00000425964 177 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC069257.2-201ENST00000441819 155 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.73□□□□□ -2.13
SIX3O95343 AC025465.3-201ENST00000510570 311 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC008834.1-201ENST00000511612 175 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC107393.1-201ENST00000512403 346 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-344P-201ENST00000516635 111 ntBASIC1.73□□□□□ -2.13
SIX3O95343 RNU6-58P-201ENST00000517143 103 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AL590705.4-201ENST00000532209 134 ntBASIC1.73□□□□□ -2.13
SIX3O95343 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.73□□□□□ -2.13
SIX3O95343 AC005668.1-201ENST00000571142 476 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC010900.2-201ENST00000604508 210 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC126177.8-201ENST00000618339 1015 ntBASIC1.73□□□□□ -2.13
SIX3O95343 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.73□□□□□ -2.13
SIX3O95343 AC022513.1-201ENST00000624512 117 ntBASIC1.73□□□□□ -2.13
SIX3O95343 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.73□□□□□ -2.13
SIX3O95343 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.73□□□□□ -2.13
SIX3O95343 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
SIX3O95343 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
SIX3O95343 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SIX3O95343 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.72□□□□□ -2.13
SIX3O95343 RNU6-727P-201ENST00000363592 107 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC019129.1-201ENST00000403786 261 ntBASIC1.72□□□□□ -2.13
SIX3O95343 MIR1267-201ENST00000408723 78 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC004866.1-201ENST00000411748 78 ntBASIC1.72□□□□□ -2.13
SIX3O95343 HSPE1P21-201ENST00000438283 308 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC011352.1-201ENST00000512300 793 ntBASIC1.72□□□□□ -2.13
SIX3O95343 Y_RNA.706-201ENST00000516933 99 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC134698.4-201ENST00000523451 826 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC024614.2-201ENST00000577584 372 ntBASIC1.72□□□□□ -2.13
SIX3O95343 AC011712.1-201ENST00000588959 234 ntBASIC1.72□□□□□ -2.13
SIX3O95343 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SIX3O95343 ZNF299P-201ENST00000406845 1804 ntBASIC1.71□□□□□ -2.14
SIX3O95343 RNU6-873P-201ENST00000363833 107 ntBASIC1.71□□□□□ -2.14
SIX3O95343 Y_RNA.205-201ENST00000364128 113 ntBASIC1.71□□□□□ -2.14
SIX3O95343 MIR625-201ENST00000385047 85 ntBASIC1.71□□□□□ -2.14
SIX3O95343 RNU6-192P-201ENST00000391253 100 ntBASIC1.71□□□□□ -2.14
SIX3O95343 RNU6-1148P-201ENST00000410992 104 ntBASIC1.71□□□□□ -2.14
SIX3O95343 USP9YP30-201ENST00000430729 455 ntBASIC1.71□□□□□ -2.14
SIX3O95343 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.71□□□□□ -2.14
SIX3O95343 RPL30P10-201ENST00000488148 337 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms