Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR3923-201ENST00000579521 83 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 uc_338.14-201ENST00000613162 166 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SCARNA17.4-201ENST00000614296 143 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 AC110079.1-202ENST00000635213 138 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.19□□□□□ -2.06
LMX1BO60663 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LMX1BO60663 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LMX1BO60663 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.18□□□□□ -2.06
LMX1BO60663 AL391987.6-201ENST00000305671 199 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNU1-72P-201ENST00000362976 153 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNU6-626P-201ENST00000363354 107 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 Y_RNA.416-201ENST00000384014 113 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNU6-20P-201ENST00000384106 107 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNU1-57P-201ENST00000384491 166 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 SNORA67.4-201ENST00000384688 142 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 Y_RNA.570-201ENST00000384750 101 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNA5SP181-201ENST00000410246 98 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 Y_RNA.602-201ENST00000410535 92 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RNU6-1328P-201ENST00000410938 106 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RN7SKP192-201ENST00000411291 327 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 ELOCP21-201ENST00000412558 336 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 AC091179.3-201ENST00000474761 144 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.18□□□□□ -2.06
LMX1BO60663 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.18□□□□□ -2.06
LMX1BO60663 AP002001.1-203ENST00000534002 267 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 AK6P2-201ENST00000549020 471 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 RRN3P3-201ENST00000549207 578 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.18□□□□□ -2.06
LMX1BO60663 MIR4524B-201ENST00000581569 115 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 MIR5092-201ENST00000583139 88 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 AL137847.3-201ENST00000611521 109 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 AC010999.1-201ENST00000611856 324 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 AL442067.1-201ENST00000613261 223 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 AC141273.2-201ENST00000618989 130 ntBASIC2.18□□□□□ -2.06
LMX1BO60663 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LMX1BO60663 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.18□□□□□ -2.06
LMX1BO60663 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
LMX1BO60663 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
LMX1BO60663 ZNF658B-202ENST00000615961 3375 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LMX1BO60663 RNU1-51P-201ENST00000365345 176 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 MIR208B-201ENST00000401172 77 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AL603910.2-201ENST00000407268 136 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 RNU4-30P-201ENST00000410245 143 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.17□□□□□ -2.06
LMX1BO60663 AC096920.1-201ENST00000423991 241 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 EIF4EP4-201ENST00000424916 578 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.17□□□□□ -2.06
LMX1BO60663 AC007395.1-201ENST00000451333 677 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AC073901.1-201ENST00000462471 408 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 HMGB3P17-201ENST00000504195 649 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 SNORA25.14-201ENST00000516481 132 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AC027176.1-201ENST00000560204 514 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AC233702.2-202ENST00000562547 291 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.17□□□□□ -2.06
LMX1BO60663 AC010297.1-201ENST00000623948 149 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 U6.104-201ENST00000637979 90 ntBASIC2.17□□□□□ -2.06
LMX1BO60663 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.17□□□□□ -2.06
LMX1BO60663 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
LMX1BO60663 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.17□□□□□ -2.06
LMX1BO60663 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.17□□□□□ -2.06
LMX1BO60663 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
LMX1BO60663 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.16□□□□□ -2.06
LMX1BO60663 AC069528.2-201ENST00000624849 1991 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 MIR6073-201ENST00000352083 89 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNU6-1210P-201ENST00000363775 107 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNU6-280P-201ENST00000364145 104 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 SNORA20.1-201ENST00000364790 130 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNU6-1180P-201ENST00000364935 107 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNU6-245P-201ENST00000384020 107 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 Y_RNA.446-201ENST00000384178 104 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 SNORA3.2-201ENST00000408221 125 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNA5SP504-201ENST00000410676 117 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 Z98742.2-201ENST00000431564 187 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.16□□□□□ -2.06
LMX1BO60663 AL441985.1-201ENST00000457727 251 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RPL36AP48-201ENST00000485521 314 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 AC026241.1-201ENST00000517873 2142 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
LMX1BO60663 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.16□□□□□ -2.06
LMX1BO60663 AC010620.2-201ENST00000600135 313 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
LMX1BO60663 MTND5P35-201ENST00000557537 1720 ntBASIC2.16□□□□□ -2.06
LMX1BO60663 RNU6-655P-201ENST00000362858 107 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 RNU1-105P-201ENST00000363470 161 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 RNU6-290P-201ENST00000365212 101 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 RNU6-338P-201ENST00000383888 105 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 Y_RNA.478-201ENST00000384358 107 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 SNORA46.1-201ENST00000391069 153 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LMX1BO60663 RNA5SP425-201ENST00000410336 112 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 RNU4-53P-201ENST00000410828 140 ntBASIC2.15□□□□□ -2.07
LMX1BO60663 RNU6-1199P-201ENST00000411249 104 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms