Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL096861.1-201ENST00000610899 123 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 AC242852.1-201ENST00000612151 96 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 AL078596.1-201ENST00000624856 447 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 AL359697.1-201ENST00000624879 587 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 SCARNA4-201ENST00000629045 128 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 AL442644.1-201ENST00000454390 3105 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.34□□□□□ -2.36
SDCBPO00560 SNORA50A-201ENST00000384225 134 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 RNU6-297P-201ENST00000384636 107 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 U8.16-201ENST00000391279 133 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.33□□□□□ -2.36
SDCBPO00560 AC244023.1-201ENST00000426884 112 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.33□□□□□ -2.36
SDCBPO00560 STAG3L5P-204ENST00000443759 179 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 MTND2P14-201ENST00000482139 351 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.33□□□□□ -2.36
SDCBPO00560 RNU1-117P-201ENST00000517041 158 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 RNU6-1223P-201ENST00000517124 104 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 AK6P2-201ENST00000549020 471 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 AC242498.1-201ENST00000604134 111 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 AC243994.1-201ENST00000618627 109 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 uc_338.11-201ENST00000619132 160 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 U6.73-201ENST00000619194 103 ntBASIC0.33□□□□□ -2.36
SDCBPO00560 MTND4P5-201ENST00000435821 1374 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AC027514.1-201ENST00000588561 1603 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU6-945P-201ENST00000383947 107 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU6-424P-201ENST00000384367 105 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU6-456P-201ENST00000384493 107 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU6-606P-201ENST00000384721 111 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU6-903P-201ENST00000391270 109 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AL451046.2-201ENST00000403074 277 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU2-9P-201ENST00000410194 145 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNA5SP247-201ENST00000411181 105 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.32□□□□□ -2.36
SDCBPO00560 RNU7-90P-201ENST00000459216 62 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 GMFBP1-201ENST00000467831 427 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.32□□□□□ -2.36
SDCBPO00560 AC113410.1-201ENST00000505029 247 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.32□□□□□ -2.36
SDCBPO00560 CCDC34P1-201ENST00000507441 517 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 RNU4-57P-201ENST00000515980 135 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AC027419.1-201ENST00000522976 328 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AL137161.1-201ENST00000532231 390 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AL512605.2-201ENST00000592972 256 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.32□□□□□ -2.36
SDCBPO00560 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 AC243829.3-201ENST00000622177 108 ntBASIC0.32□□□□□ -2.36
SDCBPO00560 ZNF204P-201ENST00000416749 2397 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 Y_RNA.123-201ENST00000363338 102 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 RNU6-1317P-201ENST00000364582 104 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 SNORA40.3-201ENST00000390964 122 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 SNORD99-201ENST00000408612 74 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AC008134.1-201ENST00000420943 193 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.31□□□□□ -2.36
SDCBPO00560 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SDCBPO00560 RNU7-138P-201ENST00000459479 64 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.31□□□□□ -2.36
SDCBPO00560 AC079140.5-201ENST00000507882 310 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 RNU7-99P-201ENST00000516271 62 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SDCBPO00560 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.31□□□□□ -2.36
SDCBPO00560 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.31□□□□□ -2.36
SDCBPO00560 MIR3682-201ENST00000581338 84 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AC025449.1-201ENST00000603896 529 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AC092354.1-201ENST00000606057 376 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AC004832.4-201ENST00000608952 331 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AL391903.3-201ENST00000612158 163 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 MIR6513-201ENST00000621188 64 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 AC068792.1-201ENST00000621354 417 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.31□□□□□ -2.36
SDCBPO00560 CASC19-280ENST00000642102 1351 ntBASIC0.31□□□□□ -2.36
SDCBPO00560 Y_RNA.100-201ENST00000363141 102 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 RNU6-181P-201ENST00000363225 107 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 RNU6-137P-201ENST00000363680 108 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 SNORD87-201ENST00000364849 89 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 SNORA2.2-201ENST00000365473 135 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AL031577.2-201ENST00000404133 280 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 RNU2-29P-201ENST00000410423 189 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.3□□□□□ -2.36
SDCBPO00560 BX295541.1-201ENST00000417774 250 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 Z99497.1-201ENST00000421282 135 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.3□□□□□ -2.36
SDCBPO00560 AC074290.1-201ENST00000448883 135 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.3□□□□□ -2.36
SDCBPO00560 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.3□□□□□ -2.36
SDCBPO00560 AC245047.8-201ENST00000456455 284 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AC022493.2-201ENST00000506122 481 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 RNU6-344P-201ENST00000516635 111 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 RNU6-445P-201ENST00000516949 107 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 MTND1P5-201ENST00000517906 940 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 MIR3192-201ENST00000584920 77 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 U2.17-201ENST00000611454 95 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AP001506.1-201ENST00000615444 211 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 AC022306.3-201ENST00000619930 550 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 OR5AK4P-201ENST00000635912 903 ntBASIC0.3□□□□□ -2.36
SDCBPO00560 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
SDCBPO00560 RNU4-28P-201ENST00000364739 141 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms