Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP3Q9Y6I4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
USP3Q9Y6I4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP3Q9Y6I4 RNU4-13P-201ENST00000364019 141 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 SNORA72-201ENST00000384339 132 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 MIR767-201ENST00000390228 109 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 SNORA48.7-201ENST00000391302 135 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AL353705.1-201ENST00000433468 480 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 NDUFB1P1-201ENST00000435191 180 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.86□□□□□ -1.79
USP3Q9Y6I4 RNU6-948P-201ENST00000516374 107 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AC026403.1-201ENST00000518938 295 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AC008011.1-201ENST00000545989 227 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AC103810.1-201ENST00000579873 453 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AC097639.2-201ENST00000603159 172 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 AL670379.3-201ENST00000605040 251 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 SNORA51-201ENST00000606420 132 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 uc_338.32-201ENST00000615087 172 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 Z82209.1-201ENST00000422141 2135 ntBASIC3.86□□□□□ -1.79
USP3Q9Y6I4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP3Q9Y6I4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP3Q9Y6I4 AL356292.1-201ENST00000283110 373 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 RNU6-1298P-201ENST00000362456 101 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 RNU6-647P-201ENST00000364243 107 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SNORD31B-201ENST00000364977 69 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SNORA62.3-201ENST00000365110 153 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 RNU6-234P-201ENST00000365229 104 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SNORD18B-201ENST00000365659 72 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 GOT2P5-201ENST00000433995 546 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 AC010531.2-201ENST00000465012 153 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SNORA31.1-201ENST00000515993 133 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 SNORA31.5-201ENST00000516190 133 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 RNU2-34P-201ENST00000516534 121 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 RNA5SP170-201ENST00000517150 101 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 AC107934.2-201ENST00000518653 310 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 MIR3613-201ENST00000579844 87 ntBASIC3.85□□□□□ -1.79
USP3Q9Y6I4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP3Q9Y6I4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.85□□□□□ -1.79
USP3Q9Y6I4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 RNU6-235P-201ENST00000362644 107 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 RNU6-486P-201ENST00000363116 107 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 Y_RNA.525-201ENST00000384570 113 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 RNU6-57P-201ENST00000411348 103 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 HMGN2P31-201ENST00000432430 273 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 AC090515.1-201ENST00000465295 476 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 AC106707.2-201ENST00000484182 374 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 AC109329.2-201ENST00000519658 482 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 AC090517.3-201ENST00000625170 141 ntBASIC3.84□□□□□ -1.79
USP3Q9Y6I4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP3Q9Y6I4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
USP3Q9Y6I4 AL391516.1-201ENST00000554380 2449 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RNU6-1083P-201ENST00000384022 107 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RNU6-1235P-201ENST00000384559 107 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AL603914.1-201ENST00000401964 204 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 Z98742.2-201ENST00000431564 187 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RNU6-498P-201ENST00000459468 107 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RNA5SP309-201ENST00000516670 106 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC133485.4-201ENST00000561835 220 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC138907.4-201ENST00000570107 226 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 MIR4662B-201ENST00000579498 81 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 MIR4429-201ENST00000580105 73 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 MIR4765-201ENST00000585007 77 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC009093.8-201ENST00000641769 292 ntBASIC3.83□□□□□ -1.8
USP3Q9Y6I4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP3Q9Y6I4 U8.1-201ENST00000362843 134 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 SNORA22-201ENST00000383907 134 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 MIR200C-201ENST00000384980 68 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 RNA5SP252-201ENST00000391131 119 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 RNU2-70P-201ENST00000410718 179 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC063976.4-201ENST00000421971 163 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 SNORD105B-201ENST00000458770 79 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC104619.4-201ENST00000510773 249 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 RN7SKP18-201ENST00000516005 275 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 SNORD77.4-201ENST00000516158 81 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 RN7SKP83-201ENST00000516512 178 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC018630.3-201ENST00000542637 96 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 AC020914.4-201ENST00000597690 277 ntBASIC3.82□□□□□ -1.8
USP3Q9Y6I4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
USP3Q9Y6I4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms