Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 SNORA60-201ENST00000362396 134 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 RNU1-22P-201ENST00000363334 158 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AL603914.1-201ENST00000401964 204 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 MIR1179-201ENST00000408703 91 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 RPL27AP5-201ENST00000469428 449 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AC097462.1-201ENST00000514125 324 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 SCARNA17.1-201ENST00000516211 143 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 SCARNA17.2-201ENST00000516334 143 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 RNU6-589P-201ENST00000516485 107 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AC069240.1-201ENST00000548774 375 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AC133485.4-201ENST00000561835 220 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AC138907.4-201ENST00000570107 226 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 AL929325.1-201ENST00000603096 117 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 SCARNA17.4-201ENST00000614296 143 ntBASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
LIMD1Q9UGP4 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AC091564.4-201ENST00000533934 2194 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AL391516.1-201ENST00000554380 2449 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.111-201ENST00000363248 100 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 RNU6-647P-201ENST00000364243 107 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.634-201ENST00000364811 113 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.294-201ENST00000364916 102 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 U6atac.2-201ENST00000408644 118 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AC126124.2-201ENST00000413542 321 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AC245102.2-201ENST00000448956 180 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 RNU7-172P-201ENST00000517125 64 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 MIR4438-201ENST00000585271 93 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 AC058791.1-201ENST00000608412 3198 ntBASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
LIMD1Q9UGP4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 MIR93-201ENST00000385024 80 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 RNU11-5P-201ENST00000391216 129 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC016909.1-201ENST00000415916 166 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC004552.1-201ENST00000419089 348 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 RPS26P3-201ENST00000470205 348 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC090543.2-201ENST00000483963 348 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC004057.1-201ENST00000485827 348 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 RNA5SP490-201ENST00000517141 136 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC025627.2-201ENST00000576220 160 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 MIR5684-201ENST00000585074 65 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AL670379.3-201ENST00000605040 251 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 AC110079.1-202ENST00000635213 138 ntBASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
LIMD1Q9UGP4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RNU1-72P-201ENST00000362976 153 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 Y_RNA.114-201ENST00000363265 113 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RNU6-1138P-201ENST00000365359 106 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RNU6-1336P-201ENST00000383886 109 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 SNORA3.3-201ENST00000408712 125 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RPS12P18-201ENST00000442381 270 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RPS4XP11-201ENST00000446897 772 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 HMGN2P18-201ENST00000450680 270 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 SNORD11-201ENST00000459124 84 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 SNORD59.2-201ENST00000516873 68 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 RNA5SP179-201ENST00000517284 121 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 AC090115.4-201ENST00000609970 188 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 JPX_2.1-201ENST00000614161 69 ntBASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.17□□□□□ -1.74
LIMD1Q9UGP4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 SNORD74.4-201ENST00000364129 80 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 RNA5SP72-201ENST00000364442 117 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 RNU6-546P-201ENST00000383991 107 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 MIR183-201ENST00000384958 110 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 RPS29P4-201ENST00000414733 161 ntBASIC4.16□□□□□ -1.74
LIMD1Q9UGP4 MLLT10P1-201ENST00000418346 262 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms