Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 SNORA63.1-201ENST00000362493 131 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.277-201ENST00000364754 102 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.286-201ENST00000364813 102 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 RNA5SP240-201ENST00000365355 128 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.415-201ENST00000384012 112 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.597-201ENST00000410463 100 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 RNA5SP120-201ENST00000410900 112 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 RNU5F-4P-201ENST00000516581 114 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 RNU6-107P-201ENST00000516643 102 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VSX1Q9NZR4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.7□□□□□ -1.98
VSX1Q9NZR4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.65-201ENST00000362846 100 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.82-201ENST00000363000 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.92-201ENST00000363043 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.235-201ENST00000364412 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.275-201ENST00000364726 110 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.306-201ENST00000365015 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.312-201ENST00000365089 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.322-201ENST00000365151 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 SNORA67.2-201ENST00000384300 149 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 MIR7-3-201ENST00000384898 110 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AL138752.1-201ENST00000452964 351 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.650-201ENST00000459002 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC140059.1-201ENST00000489238 361 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.777-201ENST00000516982 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC105245.1-201ENST00000581934 244 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.771-201ENST00000598668 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AL449363.1-201ENST00000617815 186 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 AC007318.2-201ENST00000620999 243 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.789-201ENST00000622480 102 ntBASIC2.69□□□□□ -1.98
VSX1Q9NZR4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VSX1Q9NZR4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 SNORD114-7-201ENST00000362520 77 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.101-201ENST00000363154 102 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.200-201ENST00000364018 102 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 MIR549A-201ENST00000385268 96 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 RNU6-710P-201ENST00000410424 105 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 RPL30P4-201ENST00000429309 333 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 RN7SL504P-201ENST00000494496 287 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 RNU6-155P-201ENST00000516347 100 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 RNU2-12P-201ENST00000517216 168 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 DEFB131C-201ENST00000528817 165 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 MIR5004-201ENST00000579078 107 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 AC098479.1-201ENST00000609225 154 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 AC091932.3-201ENST00000624223 323 ntBASIC2.68□□□□□ -1.98
VSX1Q9NZR4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VSX1Q9NZR4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 MIR22-201ENST00000362190 85 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.29-201ENST00000362570 113 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 RNA5SP72-201ENST00000364442 117 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 MIR95-201ENST00000385072 81 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 SNORA40.19-201ENST00000390846 128 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AC004866.1-201ENST00000411748 78 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AL139156.1-201ENST00000412785 841 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AL139109.1-201ENST00000455491 297 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 MIR4282-201ENST00000583613 67 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AL713866.2-201ENST00000603579 219 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 AC010900.2-201ENST00000604508 210 ntBASIC2.67□□□□□ -1.98
VSX1Q9NZR4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
VSX1Q9NZR4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 SNORA54-201ENST00000384281 123 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 SNORA12-201ENST00000391162 147 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AL161788.1-201ENST00000441805 169 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 RN7SL807P-201ENST00000470923 297 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AP004217.1-201ENST00000480579 346 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AC091959.1-201ENST00000495857 238 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 RNU6-138P-201ENST00000515952 107 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 RNU1-117P-201ENST00000517041 158 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 MIR3199-1-201ENST00000582434 88 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 MIR4753-201ENST00000585119 83 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AL356280.1-201ENST00000603614 379 ntBASIC2.66□□□□□ -1.98
VSX1Q9NZR4 AC108206.1-201ENST00000570186 4159 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms