Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 BTF3P4-201ENST00000418852 495 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 MTND2P29-201ENST00000438595 412 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.72□□□□□ -2.13
LIME1Q9H400 MTCO3P8-201ENST00000453691 755 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNU1-131P-201ENST00000458943 161 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RPS23P5-201ENST00000495419 428 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 SCARNA16.2-201ENST00000516520 172 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNU6-1198P-201ENST00000516904 67 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 RNU6-1213P-201ENST00000517075 94 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.72□□□□□ -2.13
LIME1Q9H400 AC134698.4-201ENST00000523451 826 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.72□□□□□ -2.13
LIME1Q9H400 AC005899.2-201ENST00000584353 90 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 AC002984.1-201ENST00000591692 448 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 SNRPGP20-201ENST00000604477 205 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 AL359697.1-201ENST00000624879 587 ntBASIC1.72□□□□□ -2.13
LIME1Q9H400 Y_RNA.2-201ENST00000362330 96 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU1-58P-201ENST00000362413 163 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 Y_RNA.48-201ENST00000362710 103 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 Y_RNA.405-201ENST00000383979 100 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 Y_RNA.451-201ENST00000384200 100 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 SNORA67.2-201ENST00000384300 149 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 Y_RNA.524-201ENST00000384564 100 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 Y_RNA.561-201ENST00000384694 100 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU6-159P-201ENST00000391080 106 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU1-139P-201ENST00000391307 165 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.71□□□□□ -2.14
LIME1Q9H400 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
LIME1Q9H400 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.71□□□□□ -2.14
LIME1Q9H400 AC004386.2-201ENST00000441858 148 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.71□□□□□ -2.14
LIME1Q9H400 SNORD13-201ENST00000459299 104 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU7-14P-201ENST00000459331 62 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU7-175P-201ENST00000515915 61 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU6-507P-201ENST00000516045 100 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU6-344P-201ENST00000516635 111 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU6-307P-201ENST00000516743 106 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 RNU2-44P-201ENST00000516795 194 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.71□□□□□ -2.14
LIME1Q9H400 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.71□□□□□ -2.14
LIME1Q9H400 MIR6840-201ENST00000611937 71 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 AC104260.1-201ENST00000616660 539 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 AC009487.4-201ENST00000624969 3585 ntBASIC1.71□□□□□ -2.14
LIME1Q9H400 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LIME1Q9H400 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LIME1Q9H400 ZNF204P-201ENST00000416749 2397 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNY1P16-201ENST00000363063 111 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 Y_RNA.355-201ENST00000365462 98 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 Y_RNA.387-201ENST00000383918 102 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6-1297P-201ENST00000384415 104 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 SNORD116-29-201ENST00000384516 83 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6-160P-201ENST00000384591 107 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6-310P-201ENST00000384655 107 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR10B-201ENST00000385011 110 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR549A-201ENST00000385268 96 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 SNORA75.6-201ENST00000391318 127 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR300-201ENST00000401138 83 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MTCYBP4-201ENST00000401524 249 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR1283-1-201ENST00000408494 87 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNA5SP504-201ENST00000410676 117 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 Y_RNA.646-201ENST00000410980 101 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MTND4LP11-201ENST00000422184 280 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 HMGN2P38-201ENST00000423806 265 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MTND3P23-201ENST00000431980 347 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MTCO1P44-201ENST00000441935 243 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.7□□□□□ -2.14
LIME1Q9H400 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.7□□□□□ -2.14
LIME1Q9H400 AC010531.2-201ENST00000465012 153 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.7□□□□□ -2.14
LIME1Q9H400 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.7□□□□□ -2.14
LIME1Q9H400 RNA5SP182-201ENST00000516064 82 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6-559P-201ENST00000516151 98 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.7□□□□□ -2.14
LIME1Q9H400 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.7□□□□□ -2.14
LIME1Q9H400 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR3169-201ENST00000578032 83 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR4448-201ENST00000584360 86 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 7SK.7-201ENST00000603504 247 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 AL355802.3-201ENST00000607571 545 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 AC100812.1-201ENST00000607622 580 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 PISRT1.1-201ENST00000616930 107 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 MIR1302-1-201ENST00000637932 143 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
LIME1Q9H400 LINC02555-201ENST00000563933 1951 ntBASIC1.7□□□□□ -2.14
LIME1Q9H400 RNU6-874P-201ENST00000362390 105 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU1-62P-201ENST00000362599 164 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU6-873P-201ENST00000363833 107 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNA5SP190-201ENST00000365222 118 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 Y_RNA.508-201ENST00000384502 114 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU6-331P-201ENST00000384724 107 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 MIR586-201ENST00000385035 97 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNY4P36-201ENST00000391116 96 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU6-321P-201ENST00000410912 106 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LIME1Q9H400 BX510359.4-201ENST00000423750 193 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 ELOCP24-201ENST00000456370 334 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 RNU7-152P-201ENST00000458982 64 ntBASIC1.69□□□□□ -2.14
LIME1Q9H400 AP000870.1-201ENST00000472927 406 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms