Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC093303.1-201ENST00000514549 295 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 RNU7-193P-201ENST00000516723 65 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 RNU6-307P-201ENST00000516743 106 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 RNU6-1098P-201ENST00000516772 96 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 AL590705.4-201ENST00000532209 134 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 AC078899.2-201ENST00000595282 212 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 AC009994.1-201ENST00000606889 253 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 AC005562.2-201ENST00000618264 111 ntBASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
ZNF541Q9H0D2 ZNF299P-201ENST00000406845 1804 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 Y_RNA.384-201ENST00000383909 102 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNU6-842P-201ENST00000384269 107 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNU6-700P-201ENST00000391043 107 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 SNORA75.4-201ENST00000391278 119 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNU6-174P-201ENST00000410406 106 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNU2-48P-201ENST00000410694 191 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 USMG5P1-201ENST00000425964 177 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC004386.2-201ENST00000441858 148 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 MTND4P18-201ENST00000447010 465 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RPL7P42-201ENST00000481005 679 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC090255.1-201ENST00000495779 349 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNA5SP137-201ENST00000516833 135 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC005899.2-201ENST00000584353 90 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 AC016727.2-201ENST00000603988 621 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 SCARNA4-201ENST00000629045 128 ntBASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
ZNF541Q9H0D2 RNU6-331P-201ENST00000384724 107 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 SNORD23.1-201ENST00000408212 104 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 SNRPEP8-201ENST00000442866 260 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 MTND5P20-201ENST00000448677 143 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RNU6-875P-201ENST00000516488 106 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RNU1-40P-201ENST00000516816 164 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RNU1-97P-201ENST00000516872 164 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.706-201ENST00000516933 99 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RNA5SP54-201ENST00000516951 92 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RNU6-264P-201ENST00000517134 104 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AP005660.1-201ENST00000522972 293 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 CBX3P8-201ENST00000532412 525 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AC026470.2-201ENST00000561492 181 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 AC233702.2-202ENST00000562547 291 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 MIR5696-201ENST00000578474 85 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 RMST_6.1-201ENST00000611980 203 ntBASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.09□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.356-201ENST00000365475 113 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.405-201ENST00000383979 100 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.451-201ENST00000384200 100 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 SNORD14D-201ENST00000384390 87 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.524-201ENST00000384564 100 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.561-201ENST00000384694 100 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 MIR29C-201ENST00000385231 88 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU6-1009P-201ENST00000390996 107 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU11-3P-201ENST00000391111 133 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU4-14P-201ENST00000410858 122 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU6-370P-201ENST00000411008 104 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU6-1304P-201ENST00000411374 106 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 TOMM22P6-201ENST00000465035 409 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.691-201ENST00000516611 103 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 MIR4529-201ENST00000578110 78 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 AC010928.2-201ENST00000588017 287 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 AC007229.1-201ENST00000590455 412 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 AC113139.1-201ENST00000605049 239 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 TCL6_2.1-201ENST00000615162 119 ntBASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
ZNF541Q9H0D2 RNA5SP138-201ENST00000365098 114 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.319-201ENST00000365138 92 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 MIR1262-201ENST00000408276 93 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 RPS26P42-201ENST00000413485 326 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 AL353997.1-201ENST00000432936 108 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 RNU7-87P-201ENST00000459343 62 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 RNU6-559P-201ENST00000516151 98 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 AC105029.1-201ENST00000520250 669 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 CBX3P4-201ENST00000538909 354 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 MIR4753-201ENST00000585119 83 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 AC025253.1-201ENST00000613623 543 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 AC104260.1-201ENST00000616660 539 ntBASIC2.07□□□□□ -2.08
ZNF541Q9H0D2 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 RNU6-545P-201ENST00000362681 104 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.70-201ENST00000362886 110 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 RNU6-595P-201ENST00000363944 107 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.474-201ENST00000384341 102 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms