Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC007215.1-201ENST00000464893 276 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC026436.1-201ENST00000510537 270 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 RN7SKP49-201ENST00000516675 260 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC073410.2-201ENST00000603240 332 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.772-201ENST00000606692 102 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC103810.6-201ENST00000606708 136 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC005296.1-201ENST00000616145 209 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 U6.104-201ENST00000637979 90 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.64-201ENST00000362845 102 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 RNU6-280P-201ENST00000364145 104 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.222-201ENST00000364264 102 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 RNU6-879P-201ENST00000364328 108 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 MIR186-201ENST00000384988 86 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 MRPL35P1-201ENST00000404272 572 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 LINC01399-202ENST00000458450 244 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC234781.5-201ENST00000508429 271 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC093023.1-201ENST00000547375 507 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC110588.1-201ENST00000559699 137 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 MIR3923-201ENST00000579521 83 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC067747.1-201ENST00000608026 250 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC062037.2-201ENST00000610137 73 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS53Q5VIR6 AC240442.1-201ENST00000616055 283 ntBASIC2.87□□□□□ -1.95
VPS53Q5VIR6 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
VPS53Q5VIR6 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS53Q5VIR6 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.26-201ENST00000362539 101 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RNU6-1210P-201ENST00000363775 107 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RNU6-806P-201ENST00000365147 105 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.396-201ENST00000383949 103 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.461-201ENST00000384263 103 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RNU1-57P-201ENST00000384491 166 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.518-201ENST00000384552 113 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR487A-201ENST00000385009 80 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR1302-6-201ENST00000408466 90 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RNU2-63P-201ENST00000410792 194 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS53Q5VIR6 AC003685.2-201ENST00000422795 395 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 WARS2P1-201ENST00000429678 537 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS53Q5VIR6 CR769767.1-201ENST00000436337 346 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 AL121594.1-201ENST00000475906 575 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 CKS1BP2-201ENST00000497342 240 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RPL23AP94-201ENST00000512518 302 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 RNU6-408P-201ENST00000515910 100 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS53Q5VIR6 AP003733.2-201ENST00000529409 171 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 UBL5P4-201ENST00000562584 236 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR5695-201ENST00000579717 85 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR4659A-201ENST00000580269 81 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR5739-201ENST00000619803 80 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 MIR1291-201ENST00000627649 87 ntBASIC2.86□□□□□ -1.95
VPS53Q5VIR6 BX322639.1-202ENST00000423987 2213 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 RNU6-655P-201ENST00000362858 107 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.188-201ENST00000363952 111 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.288-201ENST00000364854 92 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 SNORD115-46-201ENST00000390982 71 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 RNA5SP201-201ENST00000410316 124 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 EIF4EP4-201ENST00000424916 578 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 CYP2C59P-201ENST00000457790 269 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 RN7SL636P-201ENST00000497504 294 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 CTSLP2-204ENST00000629029 392 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 ZNF271P-202ENST00000465539 1970 ntBASIC2.85□□□□□ -1.95
VPS53Q5VIR6 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS53Q5VIR6 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 LINC02555-201ENST00000563933 1951 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.105-201ENST00000363182 111 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 SNORD114-30-201ENST00000364448 72 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNA5SP125-201ENST00000364843 120 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNA5SP240-201ENST00000365355 128 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.376-201ENST00000365638 108 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNU6-245P-201ENST00000384020 107 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MIR329-1-201ENST00000385028 80 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MT-TW-201ENST00000387382 68 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 MIR208B-201ENST00000401172 77 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AL079342.1-201ENST00000401460 267 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 CBX3P9-201ENST00000402326 552 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 SNORD12B-201ENST00000410433 91 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNU6-121P-201ENST00000410525 99 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS53Q5VIR6 SUMO1P4-201ENST00000429430 302 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 CBX3P6-201ENST00000430257 527 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AC073901.1-201ENST00000462471 408 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 AC140059.1-201ENST00000489238 361 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNU2-53P-201ENST00000516257 147 ntBASIC2.84□□□□□ -1.95
VPS53Q5VIR6 RNA5SP402-201ENST00000517148 110 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms