Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNRPGP7-201ENST00000469016 106 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AC016632.1-201ENST00000503994 196 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.11□□□□□ -1.91
USP39Q53GS9 RNA5SP356-201ENST00000515972 94 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 RNU6-313P-201ENST00000516317 112 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 RNA5SP367-201ENST00000516557 118 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 RNU6-1282P-201ENST00000516735 96 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AP000867.2-201ENST00000532468 320 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 AL365222.1-201ENST00000614661 98 ntBASIC3.11□□□□□ -1.91
USP39Q53GS9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
USP39Q53GS9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
USP39Q53GS9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP39Q53GS9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP39Q53GS9 MIR148B-201ENST00000362252 99 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RNU6-1272P-201ENST00000362776 107 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RNU4-84P-201ENST00000364200 139 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RNU6-312P-201ENST00000364629 107 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RNA5SP126-201ENST00000365092 109 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RNU6-449P-201ENST00000383914 107 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 Y_RNA.412-201ENST00000384001 104 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 SNORA26.3-201ENST00000391119 136 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RPS26P42-201ENST00000413485 326 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RPL32P35-201ENST00000415214 394 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 HMGN2P30-201ENST00000423237 256 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AC078809.1-201ENST00000427601 140 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AC104332.2-201ENST00000429959 156 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RPL30P12-201ENST00000474666 353 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 RPL30P5-201ENST00000494923 336 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AP002001.1-203ENST00000534002 267 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AC018448.1-201ENST00000552843 316 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.1□□□□□ -1.91
USP39Q53GS9 MIR3162-201ENST00000581818 82 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.1□□□□□ -1.91
USP39Q53GS9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP39Q53GS9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.1□□□□□ -1.91
USP39Q53GS9 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.1□□□□□ -1.91
USP39Q53GS9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.1□□□□□ -1.91
USP39Q53GS9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.1□□□□□ -1.91
USP39Q53GS9 MTND5P35-201ENST00000557537 1720 ntBASIC3.1□□□□□ -1.91
USP39Q53GS9 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.09□□□□□ -1.91
USP39Q53GS9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.09□□□□□ -1.91
USP39Q53GS9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP39Q53GS9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
USP39Q53GS9 RNU6-1285P-201ENST00000363480 105 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 Y_RNA.215-201ENST00000364204 112 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 Y_RNA.238-201ENST00000364441 102 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 SNORA54-201ENST00000384281 123 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 Y_RNA.488-201ENST00000384403 102 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 RNU2-2P-201ENST00000410396 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 RAB28P5-201ENST00000427490 651 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC010099.1-201ENST00000455434 375 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 RNU6-625P-201ENST00000459412 107 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AL121594.1-201ENST00000475906 575 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC083906.5-201ENST00000503722 328 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC091826.1-201ENST00000514065 313 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 SNORD116-25-201ENST00000516517 92 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 RNA5SP54-201ENST00000516951 92 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.09□□□□□ -1.91
USP39Q53GS9 RNU2-4P-201ENST00000606190 192 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.15-201ENST00000611544 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.16-201ENST00000613119 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.12-201ENST00000613778 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.9-201ENST00000615427 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC004467.1-201ENST00000615678 330 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.11-201ENST00000616345 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.2-201ENST00000616535 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.3-201ENST00000617785 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.19-201ENST00000618602 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 RNU2-1-201ENST00000618664 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.6-201ENST00000619225 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.5-201ENST00000619465 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 U2.10-201ENST00000620268 191 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 AC091932.3-201ENST00000624223 323 ntBASIC3.09□□□□□ -1.91
USP39Q53GS9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
USP39Q53GS9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.09□□□□□ -1.92
USP39Q53GS9 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.09□□□□□ -1.92
USP39Q53GS9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP39Q53GS9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.08□□□□□ -1.92
USP39Q53GS9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP39Q53GS9 Y_RNA.7-201ENST00000362352 102 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 Y_RNA.23-201ENST00000362496 106 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 Y_RNA.75-201ENST00000362927 97 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 RNU6-884P-201ENST00000363889 107 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 MIR549A-201ENST00000385268 96 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 RNU6-257P-201ENST00000410238 98 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.08□□□□□ -1.92
USP39Q53GS9 BTF3P11-201ENST00000426582 477 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC244670.1-201ENST00000436879 112 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 SEPT7P4-201ENST00000437076 306 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.08□□□□□ -1.92
USP39Q53GS9 Y_RNA.637-201ENST00000459424 114 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC007215.1-201ENST00000464893 276 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.08□□□□□ -1.92
USP39Q53GS9 RNU5F-8P-201ENST00000515941 111 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 RNU6-56P-201ENST00000516986 93 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC245166.1-201ENST00000521012 253 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 CKS1BP7-201ENST00000522230 235 ntBASIC3.08□□□□□ -1.92
USP39Q53GS9 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms