Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 Vault.3-201ENST00000516676 95 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC103996.1-201ENST00000555468 102 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC025627.3-201ENST00000582078 182 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MIR4753-201ENST00000585119 83 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC004492.1-201ENST00000607036 742 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC009159.2-201ENST00000617603 606 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 SEPT14P19-203ENST00000633205 211 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-552P-201ENST00000362869 119 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-336P-201ENST00000364891 107 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1240P-201ENST00000365155 104 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNA5SP259-201ENST00000365541 109 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-393P-201ENST00000384475 107 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 MIR942-201ENST00000401111 86 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 AL022718.1-201ENST00000412004 84 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 MTCO2P3-201ENST00000442543 421 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 LINC01399-202ENST00000458450 244 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNA5SP285-201ENST00000516619 119 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 AC091805.2-201ENST00000603848 235 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 AP001836.1-201ENST00000604675 523 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 AC093913.1-201ENST00000614178 329 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 SEPT14P17-201ENST00000617978 177 ntBASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.4□□□□□ -2.35
CCDC88AQ3V6T2 RNU1-76P-201ENST00000362903 159 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORD18A-201ENST00000363753 72 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU4-68P-201ENST00000364314 141 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORA80D-201ENST00000384488 135 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-550P-201ENST00000391057 101 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AL031577.2-201ENST00000404133 280 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 STAG3L5P-204ENST00000443759 179 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU7-182P-201ENST00000459009 62 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC007215.1-201ENST00000464893 276 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC116562.3-201ENST00000506136 177 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC022616.3-201ENST00000523940 148 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC068587.5-201ENST00000528506 175 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC022217.4-201ENST00000604389 163 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORD115-8-201ENST00000363856 82 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORD115-38-201ENST00000365037 82 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORA4.2-201ENST00000365313 147 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 SNORA2A-201ENST00000383885 135 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-541P-201ENST00000384709 110 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RPS26P42-201ENST00000413485 326 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC090960.1-201ENST00000421072 306 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC012306.1-201ENST00000423267 114 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC245047.3-201ENST00000429428 127 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC009237.7-201ENST00000447357 229 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 U7.7-201ENST00000459276 60 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 U8.21-201ENST00000459536 136 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-344P-201ENST00000516635 111 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 MIR5695-201ENST00000579717 85 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC008088.1-201ENST00000580993 280 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AL158050.2-201ENST00000605336 568 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 U6.108-201ENST00000637764 58 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 AC099654.13-201ENST00000639774 207 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.39□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-199P-201ENST00000362954 107 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 Y_RNA.363-201ENST00000365529 113 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 SNORD116-13-201ENST00000384408 92 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 SNORA40.4-201ENST00000390971 128 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 AL117339.3-201ENST00000418733 162 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 RNU7-138P-201ENST00000459479 64 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 MTCO3P38-201ENST00000468910 766 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 PDCD5P2-201ENST00000507570 312 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 ELOCP32-201ENST00000548625 324 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 AC146944.4-201ENST00000602697 718 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.38□□□□□ -2.35
CCDC88AQ3V6T2 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-500P-201ENST00000362349 107 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU5F-6P-201ENST00000362979 116 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-969P-201ENST00000383900 105 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-793P-201ENST00000384233 104 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 MIR518A1-201ENST00000385068 85 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL451046.2-201ENST00000403074 277 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU4-46P-201ENST00000410818 138 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 USP9YP28-201ENST00000435142 589 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC009961.2-201ENST00000435771 251 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 EPS15P1-201ENST00000448836 336 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL033528.1-201ENST00000453780 140 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1037P-201ENST00000459571 107 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 Z83818.1-201ENST00000603584 150 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 PRELID3BP2-201ENST00000605362 201 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL391834.2-201ENST00000609982 546 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC097372.5-201ENST00000623665 376 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 snoZ196.1-201ENST00000625269 89 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU4-79P-201ENST00000362764 141 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1031P-201ENST00000384773 107 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL355143.1-201ENST00000407101 841 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms