Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC008269.2-201ENST00000561915 1105 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.22□□□□□ -2.21
RFX3P48380 MIR4421-201ENST00000578133 69 ntBASIC1.22□□□□□ -2.21
RFX3P48380 MIR5006-201ENST00000583027 110 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AP003465.2-201ENST00000602571 373 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AL162413.1-201ENST00000603198 110 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AC016727.2-201ENST00000603988 621 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AP000907.4-201ENST00000604143 237 ntBASIC1.22□□□□□ -2.21
RFX3P48380 DISC2.1-201ENST00000612827 205 ntBASIC1.22□□□□□ -2.21
RFX3P48380 AL157834.3-201ENST00000615543 103 ntBASIC1.22□□□□□ -2.21
RFX3P48380 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.22□□□□□ -2.21
RFX3P48380 SNORA7.1-201ENST00000363750 139 ntBASIC1.21□□□□□ -2.22
RFX3P48380 RNU6-392P-201ENST00000364926 101 ntBASIC1.21□□□□□ -2.22
RFX3P48380 RNU6-418P-201ENST00000384035 107 ntBASIC1.21□□□□□ -2.22
RFX3P48380 SNORD116-2-201ENST00000384274 95 ntBASIC1.21□□□□□ -2.22
RFX3P48380 SNORD116-6-201ENST00000384711 96 ntBASIC1.21□□□□□ -2.22
RFX3P48380 AC060773.1-201ENST00000421698 310 ntBASIC1.21□□□□□ -2.22
RFX3P48380 USP9YP14-201ENST00000430663 563 ntBASIC1.21□□□□□ -2.22
RFX3P48380 NDUFA5P4-201ENST00000436704 385 ntBASIC1.21□□□□□ -2.22
RFX3P48380 AC019235.1-201ENST00000503847 207 ntBASIC1.21□□□□□ -2.22
RFX3P48380 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.21□□□□□ -2.22
RFX3P48380 RNU6-1332P-201ENST00000516666 104 ntBASIC1.21□□□□□ -2.22
RFX3P48380 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.21□□□□□ -2.22
RFX3P48380 AP003033.1-201ENST00000527244 415 ntBASIC1.21□□□□□ -2.22
RFX3P48380 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
RFX3P48380 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.21□□□□□ -2.22
RFX3P48380 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.21□□□□□ -2.22
RFX3P48380 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.21□□□□□ -2.22
RFX3P48380 FAM157A-202ENST00000615155 405 ntBASIC1.21□□□□□ -2.22
RFX3P48380 AL078604.3-201ENST00000615580 211 ntBASIC1.21□□□□□ -2.22
RFX3P48380 AL121890.5-201ENST00000620848 304 ntBASIC1.21□□□□□ -2.22
RFX3P48380 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.21□□□□□ -2.22
RFX3P48380 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.21□□□□□ -2.22
RFX3P48380 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
RFX3P48380 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.2□□□□□ -2.22
RFX3P48380 SNORA72.2-201ENST00000365028 127 ntBASIC1.2□□□□□ -2.22
RFX3P48380 Y_RNA.327-201ENST00000365201 102 ntBASIC1.2□□□□□ -2.22
RFX3P48380 RNU6-975P-201ENST00000384296 105 ntBASIC1.2□□□□□ -2.22
RFX3P48380 MIR515-2-201ENST00000384883 83 ntBASIC1.2□□□□□ -2.22
RFX3P48380 MIR515-1-201ENST00000384884 83 ntBASIC1.2□□□□□ -2.22
RFX3P48380 MIR521-1-201ENST00000384902 87 ntBASIC1.2□□□□□ -2.22
RFX3P48380 MIR586-201ENST00000385035 97 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.2□□□□□ -2.22
RFX3P48380 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.2□□□□□ -2.22
RFX3P48380 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.2□□□□□ -2.22
RFX3P48380 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.2□□□□□ -2.22
RFX3P48380 MTND1P1-201ENST00000445453 368 ntBASIC1.2□□□□□ -2.22
RFX3P48380 NFU1P2-201ENST00000448700 469 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.2□□□□□ -2.22
RFX3P48380 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.2□□□□□ -2.22
RFX3P48380 AC011406.1-201ENST00000512440 370 ntBASIC1.2□□□□□ -2.22
RFX3P48380 RNU6-1146P-201ENST00000516282 102 ntBASIC1.2□□□□□ -2.22
RFX3P48380 MRPS36P4-201ENST00000534436 298 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC024909.2-201ENST00000553035 286 ntBASIC1.2□□□□□ -2.22
RFX3P48380 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.2□□□□□ -2.22
RFX3P48380 AC015688.6-201ENST00000577737 104 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AL133215.3-201ENST00000609801 448 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC126177.8-201ENST00000618339 1015 ntBASIC1.2□□□□□ -2.22
RFX3P48380 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.2□□□□□ -2.22
RFX3P48380 AC091812.1-201ENST00000432235 1948 ntBASIC1.19□□□□□ -2.22
RFX3P48380 SNORD33-201ENST00000362761 85 ntBASIC1.19□□□□□ -2.22
RFX3P48380 RNU6-254P-201ENST00000363377 107 ntBASIC1.19□□□□□ -2.22
RFX3P48380 SNORD113-7-201ENST00000363762 77 ntBASIC1.19□□□□□ -2.22
RFX3P48380 Y_RNA.226-201ENST00000364337 114 ntBASIC1.19□□□□□ -2.22
RFX3P48380 RNU6-331P-201ENST00000384724 107 ntBASIC1.19□□□□□ -2.22
RFX3P48380 MRPL35P1-201ENST00000404272 572 ntBASIC1.19□□□□□ -2.22
RFX3P48380 Z83846.1-201ENST00000446798 265 ntBASIC1.19□□□□□ -2.22
RFX3P48380 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.19□□□□□ -2.22
RFX3P48380 AC004223.1-201ENST00000479840 271 ntBASIC1.19□□□□□ -2.22
RFX3P48380 AF186996.7-201ENST00000492781 209 ntBASIC1.19□□□□□ -2.22
RFX3P48380 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.19□□□□□ -2.22
RFX3P48380 RNU6-1281P-201ENST00000516223 105 ntBASIC1.19□□□□□ -2.22
RFX3P48380 RNA5SP384-201ENST00000516615 116 ntBASIC1.19□□□□□ -2.22
RFX3P48380 RNA5SP54-201ENST00000516951 92 ntBASIC1.19□□□□□ -2.22
RFX3P48380 MTND1P35-201ENST00000526739 508 ntBASIC1.19□□□□□ -2.22
RFX3P48380 RRN3P3-201ENST00000549207 578 ntBASIC1.19□□□□□ -2.22
RFX3P48380 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.19□□□□□ -2.22
RFX3P48380 RMST_3.1-201ENST00000611651 109 ntBASIC1.19□□□□□ -2.22
RFX3P48380 MIR194-1-201ENST00000384892 85 ntBASIC1.18□□□□□ -2.22
RFX3P48380 RNU6-1068P-201ENST00000410958 103 ntBASIC1.18□□□□□ -2.22
RFX3P48380 MTND3P21-201ENST00000433774 331 ntBASIC1.18□□□□□ -2.22
RFX3P48380 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.18□□□□□ -2.22
RFX3P48380 MTCO3P8-201ENST00000453691 755 ntBASIC1.18□□□□□ -2.22
RFX3P48380 AC083904.1-201ENST00000487828 231 ntBASIC1.18□□□□□ -2.22
RFX3P48380 RPL23AP75-201ENST00000491601 451 ntBASIC1.18□□□□□ -2.22
RFX3P48380 RNU6-344P-201ENST00000516635 111 ntBASIC1.18□□□□□ -2.22
RFX3P48380 RNU6-1198P-201ENST00000516904 67 ntBASIC1.18□□□□□ -2.22
RFX3P48380 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.18□□□□□ -2.22
RFX3P48380 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.18□□□□□ -2.22
RFX3P48380 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.18□□□□□ -2.22
RFX3P48380 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.18□□□□□ -2.22
RFX3P48380 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.18□□□□□ -2.22
RFX3P48380 MIR338-201ENST00000636369 67 ntBASIC1.18□□□□□ -2.22
RFX3P48380 SNORA25.9-201ENST00000365087 128 ntBASIC1.17□□□□□ -2.22
RFX3P48380 MIR499A-201ENST00000384903 122 ntBASIC1.17□□□□□ -2.22
RFX3P48380 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
RFX3P48380 MIR1287-201ENST00000408492 90 ntBASIC1.17□□□□□ -2.22
RFX3P48380 RNU6-908P-201ENST00000410160 94 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 155.7 ms