Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
MSH3P20585 U8.2-201ENST00000363156 134 ntBASIC2.11□□□□□ -2.07
MSH3P20585 SNORA63-201ENST00000363450 132 ntBASIC2.11□□□□□ -2.07
MSH3P20585 SNORA3A-201ENST00000364113 130 ntBASIC2.11□□□□□ -2.07
MSH3P20585 RNA5SP240-201ENST00000365355 128 ntBASIC2.11□□□□□ -2.07
MSH3P20585 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
MSH3P20585 AC114482.1-201ENST00000418010 247 ntBASIC2.11□□□□□ -2.07
MSH3P20585 EIF1P2-201ENST00000428233 350 ntBASIC2.11□□□□□ -2.07
MSH3P20585 AC096644.2-201ENST00000429278 159 ntBASIC2.11□□□□□ -2.07
MSH3P20585 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH3P20585 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH3P20585 RNU7-169P-201ENST00000459456 61 ntBASIC2.11□□□□□ -2.07
MSH3P20585 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.11□□□□□ -2.07
MSH3P20585 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH3P20585 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.11□□□□□ -2.07
MSH3P20585 SNORA48.11-201ENST00000517015 89 ntBASIC2.11□□□□□ -2.07
MSH3P20585 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.11□□□□□ -2.07
MSH3P20585 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH3P20585 UBL5P4-201ENST00000562584 236 ntBASIC2.11□□□□□ -2.07
MSH3P20585 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.11□□□□□ -2.07
MSH3P20585 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.11□□□□□ -2.07
MSH3P20585 U4atac.1-201ENST00000618345 95 ntBASIC2.11□□□□□ -2.07
MSH3P20585 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.11□□□□□ -2.07
MSH3P20585 AC099654.10-201ENST00000640395 161 ntBASIC2.11□□□□□ -2.07
MSH3P20585 ZNF72P-201ENST00000425869 1908 ntBASIC2.11□□□□□ -2.07
MSH3P20585 ZNF204P-201ENST00000416749 2397 ntBASIC2.1□□□□□ -2.07
MSH3P20585 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.80-201ENST00000362996 102 ntBASIC2.1□□□□□ -2.07
MSH3P20585 RNU1-23P-201ENST00000363361 144 ntBASIC2.1□□□□□ -2.07
MSH3P20585 SNORA33.2-201ENST00000365413 134 ntBASIC2.1□□□□□ -2.07
MSH3P20585 RNU6-281P-201ENST00000384212 103 ntBASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.485-201ENST00000384395 102 ntBASIC2.1□□□□□ -2.07
MSH3P20585 RNU1-148P-201ENST00000384472 162 ntBASIC2.1□□□□□ -2.07
MSH3P20585 MIR1294-201ENST00000408503 142 ntBASIC2.1□□□□□ -2.07
MSH3P20585 RN7SKP192-201ENST00000411291 327 ntBASIC2.1□□□□□ -2.07
MSH3P20585 AC027124.2-201ENST00000428249 105 ntBASIC2.1□□□□□ -2.07
MSH3P20585 CKS1BP2-201ENST00000497342 240 ntBASIC2.1□□□□□ -2.07
MSH3P20585 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.1□□□□□ -2.07
MSH3P20585 RNU6-475P-201ENST00000516073 104 ntBASIC2.1□□□□□ -2.07
MSH3P20585 MIR2355-201ENST00000517199 87 ntBASIC2.1□□□□□ -2.07
MSH3P20585 DEFB131C-201ENST00000528817 165 ntBASIC2.1□□□□□ -2.07
MSH3P20585 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.1□□□□□ -2.07
MSH3P20585 AC026470.2-201ENST00000561492 181 ntBASIC2.1□□□□□ -2.07
MSH3P20585 VN1R91P-201ENST00000594377 169 ntBASIC2.1□□□□□ -2.07
MSH3P20585 AC022432.1-201ENST00000595739 310 ntBASIC2.1□□□□□ -2.07
MSH3P20585 AL355297.2-201ENST00000604792 129 ntBASIC2.1□□□□□ -2.07
MSH3P20585 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.812-201ENST00000610788 101 ntBASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.784-201ENST00000613803 101 ntBASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.787-201ENST00000616522 101 ntBASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.780-201ENST00000617336 101 ntBASIC2.1□□□□□ -2.07
MSH3P20585 Y_RNA.801-201ENST00000619005 101 ntBASIC2.1□□□□□ -2.07
MSH3P20585 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH3P20585 MTND4P1-201ENST00000457501 1466 ntBASIC2.09□□□□□ -2.07
MSH3P20585 RNU6-873P-201ENST00000363833 107 ntBASIC2.09□□□□□ -2.07
MSH3P20585 SNORA18.2-201ENST00000383865 132 ntBASIC2.09□□□□□ -2.07
MSH3P20585 RNU6-26P-201ENST00000383985 107 ntBASIC2.09□□□□□ -2.07
MSH3P20585 RNU6-245P-201ENST00000384020 107 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AL590004.1-201ENST00000405321 300 ntBASIC2.09□□□□□ -2.07
MSH3P20585 U3.40-201ENST00000408706 208 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AL445305.1-201ENST00000432577 575 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AL160004.2-201ENST00000432935 350 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.09□□□□□ -2.07
MSH3P20585 AC107032.1-201ENST00000485945 480 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AC132942.1-201ENST00000486753 483 ntBASIC2.09□□□□□ -2.07
MSH3P20585 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.09□□□□□ -2.07
MSH3P20585 RNU6-911P-201ENST00000516523 104 ntBASIC2.09□□□□□ -2.07
MSH3P20585 GNAI2P1-201ENST00000541815 315 ntBASIC2.09□□□□□ -2.07
MSH3P20585 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH3P20585 AC090517.1-201ENST00000569307 266 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AC006600.1-201ENST00000572529 153 ntBASIC2.09□□□□□ -2.07
MSH3P20585 MIR5188-201ENST00000583467 113 ntBASIC2.09□□□□□ -2.07
MSH3P20585 MIR5002-201ENST00000584713 97 ntBASIC2.09□□□□□ -2.07
MSH3P20585 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.09□□□□□ -2.07
MSH3P20585 SNRPGP20-201ENST00000604477 205 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AC016925.2-201ENST00000605108 242 ntBASIC2.09□□□□□ -2.07
MSH3P20585 RPL17P51-201ENST00000605218 238 ntBASIC2.09□□□□□ -2.07
MSH3P20585 TCL6_2.1-201ENST00000615162 119 ntBASIC2.09□□□□□ -2.07
MSH3P20585 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.09□□□□□ -2.07
MSH3P20585 AL132822.1-201ENST00000617063 513 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AC005562.2-201ENST00000618264 111 ntBASIC2.09□□□□□ -2.07
MSH3P20585 U2.1-201ENST00000618978 145 ntBASIC2.09□□□□□ -2.07
MSH3P20585 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.09□□□□□ -2.07
MSH3P20585 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
MSH3P20585 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
MSH3P20585 AC091812.1-201ENST00000432235 1948 ntBASIC2.09□□□□□ -2.08
MSH3P20585 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
MSH3P20585 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH3P20585 RNU6-280P-201ENST00000364145 104 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RNU6-546P-201ENST00000383991 107 ntBASIC2.08□□□□□ -2.08
MSH3P20585 SNORA70B-201ENST00000384210 135 ntBASIC2.08□□□□□ -2.08
MSH3P20585 MIR561-201ENST00000385216 97 ntBASIC2.08□□□□□ -2.08
MSH3P20585 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
MSH3P20585 MRPL42P3-201ENST00000401492 326 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RNU2-48P-201ENST00000410694 191 ntBASIC2.08□□□□□ -2.08
MSH3P20585 RNU2-32P-201ENST00000411193 191 ntBASIC2.08□□□□□ -2.08
MSH3P20585 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH3P20585 HMGN2P38-201ENST00000423806 265 ntBASIC2.08□□□□□ -2.08
MSH3P20585 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.08□□□□□ -2.08
MSH3P20585 MTCO3P8-201ENST00000453691 755 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms