Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 COX6CP10-201ENST00000416832 224 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 AC112220.1-201ENST00000434628 355 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.650-201ENST00000459002 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 RPL30P12-201ENST00000474666 353 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 AC091959.1-201ENST00000495857 238 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 SNORD116-28-201ENST00000516123 91 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.683-201ENST00000516508 93 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.777-201ENST00000516982 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.33□□□□□ -1.88
COL6A1P12109 AC006199.1-201ENST00000548728 219 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A1P12109 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.33□□□□□ -1.88
COL6A1P12109 AC090897.2-201ENST00000581715 130 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 MIR4282-201ENST00000583613 67 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.771-201ENST00000598668 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.789-201ENST00000622480 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.33□□□□□ -1.88
COL6A1P12109 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A1P12109 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A1P12109 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A1P12109 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.136-201ENST00000363444 102 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RNU6-682P-201ENST00000363843 106 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RNU4-56P-201ENST00000364700 142 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AP002088.1-201ENST00000382740 395 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RNA5SP492-201ENST00000411330 114 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AC087499.2-201ENST00000432861 149 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AC005042.3-201ENST00000453230 174 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 UBL5P3-201ENST00000475112 231 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.32□□□□□ -1.88
COL6A1P12109 SCGB1D5P-201ENST00000515134 247 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 SCARNA17.1-201ENST00000516211 143 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 SCARNA17.2-201ENST00000516334 143 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 SNORA27.4-201ENST00000516650 95 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RNU6-861P-201ENST00000516745 106 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RNA5SP380-201ENST00000517190 98 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AC107016.2-201ENST00000547968 190 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 MIR3133-201ENST00000583157 78 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 SCARNA17.4-201ENST00000614296 143 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 RBBP8P1-201ENST00000449447 1844 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 AC002543.1-201ENST00000299783 1954 ntBASIC3.32□□□□□ -1.88
COL6A1P12109 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A1P12109 RNU6-1285P-201ENST00000363480 105 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 Y_RNA.383-201ENST00000383855 97 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 SNORA70B-201ENST00000384210 135 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 RNU6-622P-201ENST00000384272 103 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 RNU6-19P-201ENST00000384718 107 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 MIR320B2-201ENST00000408479 138 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 RPL19P1-201ENST00000411635 428 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AC138623.1-201ENST00000418060 216 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AC019205.3-201ENST00000424573 156 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL445687.1-201ENST00000439946 251 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL161651.1-201ENST00000440882 223 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.31□□□□□ -1.88
COL6A1P12109 AC074133.1-201ENST00000515696 183 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 RNU6-255P-201ENST00000516957 105 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.31□□□□□ -1.88
COL6A1P12109 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.31□□□□□ -1.88
COL6A1P12109 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.31□□□□□ -1.88
COL6A1P12109 AC233702.2-202ENST00000562547 291 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 MIR3910-1-201ENST00000580936 111 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL590240.4-201ENST00000616908 390 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL449363.1-201ENST00000617815 186 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL590808.1-201ENST00000618696 141 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 AL109809.4-201ENST00000603520 2185 ntBASIC3.31□□□□□ -1.88
COL6A1P12109 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A1P12109 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
COL6A1P12109 Y_RNA.179-201ENST00000363844 90 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 RNU6-461P-201ENST00000364195 107 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 Y_RNA.418-201ENST00000384029 102 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 Y_RNA.446-201ENST00000384178 104 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 RNU6-1289P-201ENST00000384431 106 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL6A1P12109 MIR887-201ENST00000401258 79 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 RNU2-52P-201ENST00000410680 190 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.3□□□□□ -1.88
COL6A1P12109 UQCRBP2-201ENST00000447827 297 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 AC006539.3-201ENST00000454258 129 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 AP000705.1-201ENST00000454567 350 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 SNORD109B-201ENST00000458961 67 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 SNORD109A-201ENST00000459128 67 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 AC107626.1-201ENST00000471084 183 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 Y_RNA.662-201ENST00000516028 97 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 MIR3136-201ENST00000583498 78 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 AL356575.1-201ENST00000603008 283 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.3□□□□□ -1.88
COL6A1P12109 AC073349.3-201ENST00000617616 186 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 MIR7843-201ENST00000622274 79 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
COL6A1P12109 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL6A1P12109 AC135776.4-201ENST00000624300 1904 ntBASIC3.3□□□□□ -1.88
COL6A1P12109 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL6A1P12109 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A1P12109 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL6A1P12109 AC010329.5-201ENST00000623497 2174 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.29□□□□□ -1.88
COL6A1P12109 ZNF204P-201ENST00000416749 2397 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 RNU6-245P-201ENST00000384020 107 ntBASIC3.29□□□□□ -1.88
COL6A1P12109 SNORA26.7-201ENST00000391288 122 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms