Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TRMT112P2-201ENST00000512910 132 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 RNU6-835P-201ENST00000516974 104 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 RNU1-117P-201ENST00000517041 158 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 AC026371.1-201ENST00000551867 419 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.36□□□□□ -2.19
CLDN3O15551 AC100830.2-201ENST00000581636 240 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 AC137590.2-201ENST00000619709 240 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 SCARNA4-201ENST00000629045 128 ntBASIC1.36□□□□□ -2.19
CLDN3O15551 SNORD116-9-201ENST00000384000 95 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 SNORD26-201ENST00000384147 75 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 SNORD116-3-201ENST00000384287 95 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-784P-201ENST00000384330 106 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 SNORD116-7-201ENST00000384404 95 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 SNORD116-5-201ENST00000384462 95 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-790P-201ENST00000384479 105 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-1065P-201ENST00000384513 106 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MIR515-2-201ENST00000384883 83 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MIR515-1-201ENST00000384884 83 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MIR586-201ENST00000385035 97 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MIR514A2-201ENST00000385131 88 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MIR514A3-201ENST00000385132 88 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 MTCO3P40-201ENST00000392516 676 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-648P-201ENST00000410190 107 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-321P-201ENST00000410912 106 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 USP9YP14-201ENST00000430663 563 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.35□□□□□ -2.19
CLDN3O15551 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.35□□□□□ -2.19
CLDN3O15551 RNU7-57P-201ENST00000459540 60 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.35□□□□□ -2.19
CLDN3O15551 AC005840.1-201ENST00000498412 377 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RNU6-405P-201ENST00000516637 110 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.35□□□□□ -2.19
CLDN3O15551 AC015688.6-201ENST00000577737 104 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 CPDP1-201ENST00000579660 283 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 AP003465.2-201ENST00000602571 373 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 AL078596.1-201ENST00000624856 447 ntBASIC1.35□□□□□ -2.19
CLDN3O15551 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.35□□□□□ -2.19
CLDN3O15551 Y_RNA.231-201ENST00000364358 102 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 RNU6-259P-201ENST00000383999 107 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 SNRPEP10-201ENST00000420249 274 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.34□□□□□ -2.19
CLDN3O15551 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.34□□□□□ -2.19
CLDN3O15551 RPL23AP75-201ENST00000491601 451 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.34□□□□□ -2.19
CLDN3O15551 AC005668.1-201ENST00000571142 476 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 AC010620.1-201ENST00000601088 1102 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 AC097065.2-201ENST00000608159 533 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 MIR6078-201ENST00000611069 100 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 FAM157A-202ENST00000615155 405 ntBASIC1.34□□□□□ -2.19
CLDN3O15551 OR4G1P-203ENST00000641984 1631 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 Y_RNA.167-201ENST00000363735 109 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 MIR487A-201ENST00000385009 80 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 RNU6-1068P-201ENST00000410958 103 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.33□□□□□ -2.2
CLDN3O15551 AL353572.1-201ENST00000442490 417 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.33□□□□□ -2.2
CLDN3O15551 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.33□□□□□ -2.2
CLDN3O15551 HMGN1P12-201ENST00000499125 195 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AC090821.2-201ENST00000523552 176 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.33□□□□□ -2.2
CLDN3O15551 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.33□□□□□ -2.2
CLDN3O15551 AC016957.1-201ENST00000534895 309 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AL512360.1-201ENST00000555346 234 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AC004492.1-201ENST00000607036 742 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.33□□□□□ -2.2
CLDN3O15551 AC124864.2-201ENST00000624736 186 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 AC121333.1-201ENST00000567488 2709 ntBASIC1.33□□□□□ -2.2
CLDN3O15551 MIR513A1-201ENST00000385138 129 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CLDN3O15551 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.32□□□□□ -2.2
CLDN3O15551 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.32□□□□□ -2.2
CLDN3O15551 ERLEC1P1-201ENST00000433806 578 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 AC015922.2-201ENST00000435593 184 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 AC098826.2-201ENST00000452011 651 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.32□□□□□ -2.2
CLDN3O15551 RNU6-89P-201ENST00000606519 100 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 AL133215.3-201ENST00000609801 448 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 snoZ196.1-201ENST00000625269 89 ntBASIC1.32□□□□□ -2.2
CLDN3O15551 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
CLDN3O15551 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CLDN3O15551 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.31□□□□□ -2.2
CLDN3O15551 RNU6-392P-201ENST00000364926 101 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 RNA5SP259-201ENST00000365541 109 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 Y_RNA.373-201ENST00000365600 103 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 MIR194-1-201ENST00000384892 85 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 RNA5SP467-201ENST00000391274 118 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 CALM2P3-201ENST00000400429 449 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 AL590002.1-201ENST00000406554 418 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 RNU2-66P-201ENST00000410650 161 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.31□□□□□ -2.2
CLDN3O15551 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.31□□□□□ -2.2
CLDN3O15551 EIF1P1-201ENST00000421436 341 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 SNX2P2-201ENST00000424553 323 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 SEPT14P3-201ENST00000439401 183 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 AL732372.2-207ENST00000445840 183 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.31□□□□□ -2.2
CLDN3O15551 SEPT14P2-201ENST00000453405 183 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 RNU7-187P-201ENST00000458985 68 ntBASIC1.31□□□□□ -2.2
CLDN3O15551 AL163195.1-201ENST00000496941 348 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms