Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RNU6-160P-201ENST00000384591 107 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 MIR29C-201ENST00000385231 88 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 MIR1283-1-201ENST00000408494 87 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 MIR1283-2-201ENST00000408621 87 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 MIR1261-201ENST00000408659 82 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 RNA5SP450-201ENST00000411206 102 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AL121890.1-201ENST00000435457 205 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC096638.1-201ENST00000444678 216 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC009237.7-201ENST00000447357 229 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC022493.2-201ENST00000506122 481 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 RNA5SP54-201ENST00000516951 92 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC104581.2-201ENST00000572227 430 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AL109918.3-201ENST00000603072 338 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC084781.2-201ENST00000615568 161 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 AC092881.1-201ENST00000638218 2733 ntBASIC1.78□□□□□ -2.12
NKX6-3A6NJ46 LINC02555-201ENST00000563933 1951 ntBASIC1.78□□□□□ -2.13
NKX6-3A6NJ46 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR340-201ENST00000362125 95 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 RNU1-58P-201ENST00000362413 163 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.263-201ENST00000364659 114 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR676-201ENST00000390702 67 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 RNU6-159P-201ENST00000391080 106 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR190B-201ENST00000401119 79 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC096920.1-201ENST00000423991 241 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 USP9YP16-201ENST00000430287 407 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 USP9YP23-201ENST00000455085 407 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC016925.1-201ENST00000458303 298 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.653-201ENST00000459091 95 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC010531.2-201ENST00000465012 153 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC004584.2-201ENST00000570407 410 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR5701-3-201ENST00000578890 82 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC005899.2-201ENST00000584353 90 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR5701-1-201ENST00000585138 82 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC012493.3-201ENST00000604494 112 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 RPL17P51-201ENST00000605218 238 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 MIR5701-2-201ENST00000615634 82 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 ZNF702P-202ENST00000434269 1966 ntBASIC1.77□□□□□ -2.13
NKX6-3A6NJ46 AC008555.8-201ENST00000623602 2168 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.358-201ENST00000365491 99 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 SNORD116-29-201ENST00000384516 83 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 MIR10B-201ENST00000385011 110 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AL512604.1-201ENST00000404812 257 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 RNA5SP338-201ENST00000410495 85 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 U8.22-201ENST00000459141 133 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.632-201ENST00000459189 102 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 RPL17P19-201ENST00000489069 552 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.675-201ENST00000516389 149 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 RNU6-307P-201ENST00000516743 106 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 RNU6-1198P-201ENST00000516904 67 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 RNU6-264P-201ENST00000517134 104 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AC025253.1-201ENST00000613623 543 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 AC005296.1-201ENST00000616145 209 ntBASIC1.76□□□□□ -2.13
NKX6-3A6NJ46 SNORD115-8-201ENST00000363856 82 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 RNY3P11-201ENST00000364153 102 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 SNORD115-38-201ENST00000365037 82 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 Y_RNA.415-201ENST00000384012 112 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 SNORA40.19-201ENST00000390846 128 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 RNY4P36-201ENST00000391116 96 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC007098.1-201ENST00000420122 367 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 MTCYBP10-201ENST00000424905 650 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 RNU6-717P-201ENST00000459076 104 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 MIR2053-201ENST00000459295 91 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC091179.3-201ENST00000474761 144 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC105758.1-201ENST00000506038 399 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC093303.1-201ENST00000514549 295 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 IGKV3-31-201ENST00000523109 329 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 MZT1P2-201ENST00000604387 248 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AC083806.3-201ENST00000614016 455 ntBASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.75□□□□□ -2.13
NKX6-3A6NJ46 AL159152.1-201ENST00000635019 2587 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 RNU6-879P-201ENST00000364328 108 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 SNORA75.6-201ENST00000391318 127 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 MIR300-201ENST00000401138 83 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 AL079342.1-201ENST00000401460 267 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 AC010095.1-201ENST00000443543 144 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 AC007395.1-201ENST00000451333 677 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 RNU7-169P-201ENST00000459456 61 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 RNA5SP57-201ENST00000459463 123 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 HMGN2P9-201ENST00000476875 229 ntBASIC1.74□□□□□ -2.13
NKX6-3A6NJ46 YWHAEP4-201ENST00000505390 198 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms