Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MTATP6P13-201ENST00000438531 667 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU7-14P-201ENST00000459331 62 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 RPL23AP63-201ENST00000498752 471 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 AC018710.1-201ENST00000506509 158 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 AC022254.1-201ENST00000567857 235 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR4742-201ENST00000581069 85 ntBASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
PCDHGA1Q9Y5H4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORD31B-201ENST00000364977 69 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 RNA5SP190-201ENST00000365222 118 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR597-201ENST00000384968 97 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORA12.2-201ENST00000391040 156 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 FGF7P8-201ENST00000402994 292 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 MTND3P8-201ENST00000412909 339 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 NCOR1P3-201ENST00000420479 303 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AL139396.1-201ENST00000421137 167 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AL358453.1-201ENST00000422522 250 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 PPP1R2P5-201ENST00000457256 603 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AC107393.1-201ENST00000512403 346 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 Y_RNA.682-201ENST00000516457 100 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORA25.15-201ENST00000516487 89 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AC026470.2-201ENST00000561492 181 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR5696-201ENST00000578474 85 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AC011712.1-201ENST00000588959 234 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AC016727.2-201ENST00000603988 621 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 SCARNA4-201ENST00000629045 128 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 AL133216.2-202ENST00000634512 349 ntBASIC1.86□□□□□ -2.11
PCDHGA1Q9Y5H4 MTND5P9-201ENST00000503854 1755 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORD114-6-201ENST00000364393 72 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORA18.2-201ENST00000383865 132 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU6-1026P-201ENST00000384465 108 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU6-306P-201ENST00000384617 107 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORA17.3-201ENST00000391159 129 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU6-174P-201ENST00000410406 106 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 RPL31P63-201ENST00000422565 375 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 MTND1P2-201ENST00000430604 821 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 MTND5P5-201ENST00000503764 376 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 DEFB131C-201ENST00000528817 165 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR4790-201ENST00000577799 79 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC010900.2-201ENST00000604508 210 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 AC005562.2-201ENST00000618264 111 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 MTND4P5-201ENST00000435821 1374 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 CASC19-280ENST00000642102 1351 ntBASIC1.85□□□□□ -2.11
PCDHGA1Q9Y5H4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR340-201ENST00000362125 95 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 RNY1P10-201ENST00000363268 113 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU4-9P-201ENST00000364951 139 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 U8.10-201ENST00000384260 133 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORA67.5-201ENST00000391036 107 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 SNRPEP8-201ENST00000442866 260 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC007395.1-201ENST00000451333 677 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC016925.1-201ENST00000458303 298 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 SNORD5.1-201ENST00000458800 75 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC046134.1-201ENST00000514454 666 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 RNU1-54P-201ENST00000517181 120 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 ANP32BP3-201ENST00000559213 706 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR3198-2-201ENST00000577868 80 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR3169-201ENST00000578032 83 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR4255-201ENST00000579351 72 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR5089-201ENST00000580047 84 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AC010928.2-201ENST00000588017 287 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 TCL6_2.1-201ENST00000615162 119 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 MIR6128-201ENST00000615528 109 ntBASIC1.84□□□□□ -2.11
PCDHGA1Q9Y5H4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
PCDHGA1Q9Y5H4 SNORD115-32-201ENST00000364079 82 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 MIR548K-201ENST00000408406 116 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 RNU6-321P-201ENST00000410912 106 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 USP9YP30-201ENST00000430729 455 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 HSPE1P21-201ENST00000438283 308 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 AC004386.2-201ENST00000441858 148 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 RPL23AP7-203ENST00000449021 469 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 AL021397.1-201ENST00000451806 248 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 FO393415.2-201ENST00000480085 343 ntBASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.83□□□□□ -2.12
PCDHGA1Q9Y5H4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms