Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHB3Q9Y5E6 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHB3Q9Y5E6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHB3Q9Y5E6 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHB3Q9Y5E6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHB3Q9Y5E6 CPHL1P-201ENST00000461341 3407 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 ZNF720P1-201ENST00000562403 1939 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 RNU1-15P-201ENST00000353977 144 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 RNA5SP388-201ENST00000362584 119 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 MIR548A2-201ENST00000384956 97 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 AC016909.1-201ENST00000415916 166 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 PARP4P3-201ENST00000510265 317 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 AC079598.5-201ENST00000547460 117 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 MIR3690-201ENST00000580266 75 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 MIR3138-201ENST00000585238 82 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
PCDHB3Q9Y5E6 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 RNY1P1-201ENST00000364372 112 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 Y_RNA.290-201ENST00000364879 114 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 MIR548D2-201ENST00000384955 97 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 ATP6V0E1P1-201ENST00000412537 226 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 HLA-N-201ENST00000437516 135 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 PHBP16-201ENST00000446318 950 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 RPL35AP15-201ENST00000468042 339 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 Y_RNA.666-201ENST00000516187 112 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 RN7SKP209-201ENST00000516888 304 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 CYP4A43P-201ENST00000568156 121 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 MIR5197-201ENST00000583721 112 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 AC008739.2-201ENST00000597006 317 ntBASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
PCDHB3Q9Y5E6 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNA5SP307-201ENST00000362863 116 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNU6-690P-201ENST00000365242 106 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNU6-1296P-201ENST00000383879 107 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 MIR93-201ENST00000385024 80 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 AL513477.1-202ENST00000417061 214 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 AL500522.2-201ENST00000448562 343 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RN7SL98P-201ENST00000462271 300 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RPL36AP48-201ENST00000485521 314 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 SCARNA23-201ENST00000516060 130 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNU6-693P-201ENST00000516134 107 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNU6-948P-201ENST00000516374 107 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNA5SP367-201ENST00000516557 118 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 RNU7-172P-201ENST00000517125 64 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 DEFB131E-201ENST00000532329 154 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 ZYXP1-201ENST00000617638 118 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 AL162726.3-218ENST00000636401 95 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 AC009487.4-201ENST00000624969 3585 ntBASIC4.27□□□□□ -1.73
PCDHB3Q9Y5E6 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RNY3P2-201ENST00000362918 102 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RNU6-1240P-201ENST00000365155 104 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RNA5SP104-201ENST00000410989 118 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 SNORA74C-2-201ENST00000411179 201 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RPL39P25-201ENST00000449384 154 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RNA5SP57-201ENST00000459463 123 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 AC026402.1-201ENST00000513642 170 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 RNU2-13P-201ENST00000515909 113 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 AC068657.1-201ENST00000520807 306 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 MRPL49P2-201ENST00000521066 465 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 IFITM8P-201ENST00000522529 394 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 MIR4438-201ENST00000585271 93 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 AC007229.1-201ENST00000590455 412 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 IGLL4P-201ENST00000614590 133 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 AC007546.2-201ENST00000623996 360 ntBASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
PCDHB3Q9Y5E6 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
PCDHB3Q9Y5E6 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms