Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MIR1302-10-201ENST00000408734 138 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AL354751.2-201ENST00000415471 210 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 SUMO1P4-201ENST00000429430 302 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 MTND4P19-201ENST00000446659 478 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AC016925.1-201ENST00000458303 298 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AC096725.1-201ENST00000514266 313 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 RNA5SP137-201ENST00000516833 135 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 RN7SKP295-201ENST00000517264 153 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 MIR1302-2-201ENST00000607096 138 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AC022202.1-201ENST00000613515 211 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AL078596.1-201ENST00000624856 447 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 AL606534.2-204ENST00000635008 178 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 MIR4272-201ENST00000635924 64 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-474P-201ENST00000384243 107 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 RNY1P14-201ENST00000384426 108 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.595-201ENST00000410403 105 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 MTCO3P19-201ENST00000415864 321 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 Z98742.3-201ENST00000418637 326 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 AC123900.1-201ENST00000420390 96 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.673-201ENST00000516306 88 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 CYCSP23-201ENST00000519781 313 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 AC083806.3-201ENST00000614016 455 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 AC068205.3-201ENST00000636385 468 ntBASIC3.72□□□□□ -1.81
CCDC9Q9Y3X0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP361-201ENST00000362686 118 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 SNORD115-3-201ENST00000363100 82 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.162-201ENST00000363683 102 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.332-201ENST00000365271 113 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 MIR586-201ENST00000385035 97 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 MIR764-201ENST00000390811 85 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 MIR1262-201ENST00000408276 93 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP274-201ENST00000410484 108 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP21-201ENST00000410917 96 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 MCFD2P1-201ENST00000417812 300 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 AL591806.2-201ENST00000433122 173 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RPL23AP22-201ENST00000437556 453 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 AC007395.1-201ENST00000451333 677 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP217-201ENST00000515959 91 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RN7SKP49-201ENST00000516675 260 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-988P-201ENST00000519081 107 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 AL442163.3-201ENST00000554110 156 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 AC233702.2-202ENST00000562547 291 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 DEFB122-202ENST00000569013 197 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 MZT1P2-201ENST00000604387 248 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 AC138305.3-201ENST00000624988 240 ntBASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC9Q9Y3X0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.238-201ENST00000364441 102 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 SNORD114-30-201ENST00000364448 72 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 SNORA51.4-201ENST00000364993 124 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 MIR329-1-201ENST00000385028 80 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 MIR29C-201ENST00000385231 88 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 RNU4-77P-201ENST00000516692 156 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 RNU1-104P-201ENST00000517280 175 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 HSBP1P1-201ENST00000555205 166 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 AC007485.1-201ENST00000616755 206 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 AC008873.1-201ENST00000625051 138 ntBASIC3.7□□□□□ -1.82
CCDC9Q9Y3X0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.31-201ENST00000362574 102 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-1301P-201ENST00000362724 104 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 MIR524-201ENST00000385242 87 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 AL590004.1-201ENST00000405321 300 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 MIR1289-2-201ENST00000408360 111 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP344-201ENST00000411081 104 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 RPL32P35-201ENST00000415214 394 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 AC009963.1-201ENST00000417265 157 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 AL160004.2-201ENST00000432935 350 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 AP000942.4-201ENST00000604811 241 ntBASIC3.69□□□□□ -1.82
CCDC9Q9Y3X0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 ZNF72P-201ENST00000425869 1908 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-805P-201ENST00000365643 106 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-1227P-201ENST00000383981 107 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 Y_RNA.415-201ENST00000384012 112 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 SNORA40.19-201ENST00000390846 128 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RNA5SP247-201ENST00000411181 105 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RN7SKP192-201ENST00000411291 327 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AC005534.2-201ENST00000431047 433 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 UQCRBP2-201ENST00000447827 297 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 CHEK2P4-201ENST00000450340 246 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 HMGN2P9-201ENST00000476875 229 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RN7SL499P-201ENST00000481141 276 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 SNORA25.10-201ENST00000515926 124 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 RNU6-548P-201ENST00000517083 115 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 IGKV3-31-201ENST00000523109 329 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 GNAI2P1-201ENST00000541815 315 ntBASIC3.68□□□□□ -1.82
CCDC9Q9Y3X0 AC022432.1-201ENST00000595739 310 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms