Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 AC005042.3-201ENST00000453230 174 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 RPL23AP94-201ENST00000512518 302 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 RNU6-388P-201ENST00000517012 105 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 RNU6-389P-201ENST00000517048 105 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 AC004832.5-201ENST00000608677 401 ntBASIC3.58□□□□□ -1.84
DDX41Q9UJV9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
DDX41Q9UJV9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AL355596.1-201ENST00000565399 3996 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 RNA5SP240-201ENST00000365355 128 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.352-201ENST00000365439 102 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 RNU6-1264P-201ENST00000383891 107 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.416-201ENST00000384014 113 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 SNORA44-201ENST00000384584 132 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.569-201ENST00000384749 103 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 BMS1P22-201ENST00000414726 313 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 Z82209.1-201ENST00000422141 2135 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 RPL23AP58-201ENST00000440453 469 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 UQCRHP3-201ENST00000451503 251 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 HSPE1P25-201ENST00000455484 251 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 SCARNA24.2-201ENST00000516968 130 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AC007536.1-201ENST00000533382 349 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AC006380.1-201ENST00000603598 186 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AC022441.3-201ENST00000605737 136 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 uc_338.25-201ENST00000613756 156 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 AC004467.1-201ENST00000615678 330 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 MIR622-201ENST00000638396 96 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
DDX41Q9UJV9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.57□□□□□ -1.84
DDX41Q9UJV9 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RNU6-326P-201ENST00000365480 107 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RNU6-102P-201ENST00000384485 104 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 FO393413.1-201ENST00000402892 195 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RNU2-63P-201ENST00000410792 194 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 AC004866.1-201ENST00000411748 78 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RPL32P35-201ENST00000415214 394 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 CST9LP2-201ENST00000437612 320 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RNA5SP76-201ENST00000516277 87 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 RNU2-31P-201ENST00000516954 155 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 LARP7P3-201ENST00000579888 337 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 AC006386.2-201ENST00000624491 75 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 AC012005.1-201ENST00000624575 75 ntBASIC3.56□□□□□ -1.84
DDX41Q9UJV9 AC092435.3-201ENST00000565538 3654 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 MIR410-201ENST00000362222 80 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.16-201ENST00000362421 102 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 RNU1-72P-201ENST00000362976 153 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 RNU6-514P-201ENST00000384208 107 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 RNU6-1026P-201ENST00000384465 108 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AL031121.1-201ENST00000406553 254 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 ARL5AP4-201ENST00000430731 512 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 POLR2KP2-201ENST00000438155 177 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AC074290.1-201ENST00000448883 135 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 UBE2DNL-203ENST00000474922 222 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 HMGB3P17-201ENST00000504195 649 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 SERF1AP1-201ENST00000514575 187 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 RNU6-1098P-201ENST00000516772 96 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 RN7SKP282-201ENST00000516824 299 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 MIR3616-201ENST00000584070 92 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AC008749.1-201ENST00000597650 306 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AC127459.3-201ENST00000624328 466 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 IGHVIII-44-202ENST00000636235 289 ntBASIC3.55□□□□□ -1.84
DDX41Q9UJV9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.55□□□□□ -1.84
DDX41Q9UJV9 AL365361.1-201ENST00000566942 3481 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 FAM35CP-201ENST00000554755 2470 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 AC092593.1-201ENST00000515413 1815 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
DDX41Q9UJV9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
DDX41Q9UJV9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.60-201ENST00000362831 98 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 U3.8-201ENST00000363675 217 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 SNORA80A-201ENST00000363922 136 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.257-201ENST00000364596 102 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 SNORD87-201ENST00000364849 89 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 SNORA54-201ENST00000384281 123 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 Y_RNA.515-201ENST00000384535 112 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 MIR300-201ENST00000401138 83 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 RN7SKP220-201ENST00000410611 288 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 AL513477.1-202ENST00000417061 214 ntBASIC3.54□□□□□ -1.84
DDX41Q9UJV9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms