Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 U8.13-201ENST00000390842 128 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNA5SP100-201ENST00000410903 110 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNA5SP59-201ENST00000410922 110 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 NCOR1P3-201ENST00000420479 303 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 MTCO3P8-201ENST00000453691 755 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AC097473.1-201ENST00000508142 408 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AC008834.1-201ENST00000511612 175 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNU2-34P-201ENST00000516534 121 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNU6-566P-201ENST00000516790 107 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNU6-1088P-201ENST00000516850 104 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNU6-1198P-201ENST00000516904 67 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RNA5SP454-201ENST00000517231 127 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 SUMO2P18-201ENST00000518873 252 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 RRN3P3-201ENST00000549207 578 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 SUB1P4-201ENST00000566062 339 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 MIR4753-201ENST00000585119 83 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 AC007014.2-201ENST00000615581 479 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.67□□□□□ -2.14
DDX28Q9NUL7 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
DDX28Q9NUL7 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 SNORD115-32-201ENST00000364079 82 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 U8.10-201ENST00000384260 133 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 RNU6-192P-201ENST00000391253 100 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 RNU2-20P-201ENST00000410425 191 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 RNA5SP182-201ENST00000516064 82 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 RNU6-948P-201ENST00000516374 107 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 RNU6-273P-201ENST00000516937 96 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC018638.8-201ENST00000588755 281 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
DDX28Q9NUL7 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.65□□□□□ -2.14
DDX28Q9NUL7 SNORD115-8-201ENST00000363856 82 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 Y_RNA.301-201ENST00000364990 103 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 SNORD115-38-201ENST00000365037 82 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 RNU6-596P-201ENST00000365395 98 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 RNU6-418P-201ENST00000384035 107 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 MIR32-201ENST00000384965 70 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 MIR549A-201ENST00000385268 96 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.65□□□□□ -2.15
DDX28Q9NUL7 NFU1P2-201ENST00000448700 469 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 ATP5J2P3-201ENST00000451550 258 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 snoU13.30-201ENST00000458951 104 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AF235103.2-201ENST00000525753 346 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.65□□□□□ -2.15
DDX28Q9NUL7 MIR5696-201ENST00000578474 85 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AC080078.2-201ENST00000603766 501 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AC103810.8-201ENST00000607347 118 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AC027514.1-201ENST00000588561 1603 ntBASIC1.65□□□□□ -2.15
DDX28Q9NUL7 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
DDX28Q9NUL7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 ZNF204P-201ENST00000416749 2397 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 SNORA40.18-201ENST00000391200 128 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 RNU6-510P-201ENST00000391239 108 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 MIR934-201ENST00000401241 83 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC004866.1-201ENST00000411748 78 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 MTND1P4-201ENST00000435196 415 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 MTND1P17-201ENST00000448961 204 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC114982.1-201ENST00000469402 321 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC027575.1-201ENST00000481064 460 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC108729.3-201ENST00000513484 108 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 RNU4-49P-201ENST00000516080 140 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 RNU6-856P-201ENST00000516959 98 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 MIR4273-201ENST00000582824 84 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 7SK.7-201ENST00000603504 247 ntBASIC1.64□□□□□ -2.15
DDX28Q9NUL7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
DDX28Q9NUL7 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR126-201ENST00000362291 85 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-137P-201ENST00000363680 108 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-245P-201ENST00000384020 107 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-975P-201ENST00000384296 105 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 RNU6-306P-201ENST00000384617 107 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR487A-201ENST00000385009 80 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR586-201ENST00000385035 97 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MIR153-2-201ENST00000385225 87 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 Z82188.1-201ENST00000436709 154 ntBASIC1.63□□□□□ -2.15
DDX28Q9NUL7 MTATP6P13-201ENST00000438531 667 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms