Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SNORD41-201ENST00000386967 70 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC074290.1-201ENST00000448883 135 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 RNU6-1037P-201ENST00000459571 107 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC007215.1-201ENST00000464893 276 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 RPS26P48-201ENST00000491713 339 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 RNU7-128P-201ENST00000517247 62 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC136628.3-201ENST00000521868 290 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC025423.5-201ENST00000550230 219 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 MIR4778-201ENST00000577635 80 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 MIR3915-201ENST00000578518 97 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC064836.2-201ENST00000609491 462 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AL360219.1-201ENST00000610230 366 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AL513423.1-201ENST00000621695 132 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AC007494.3-201ENST00000624660 743 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 AL078596.1-201ENST00000624856 447 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 MTND4P5-201ENST00000435821 1374 ntBASIC0.68□□□□□ -2.3
VCX3AQ9NNX9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 RNU4-76P-201ENST00000364509 141 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 RNU6-1240P-201ENST00000365155 104 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 MIR487A-201ENST00000385009 80 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 MRPL42P3-201ENST00000401492 326 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 RPS3AP1-201ENST00000413190 320 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 SNRPGP9-201ENST00000456025 225 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 AL356010.1-201ENST00000456364 102 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 RNU6-221P-201ENST00000459541 99 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 RNU6-947P-201ENST00000516264 106 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 HIF1AP1-201ENST00000553642 175 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 SUB1P2-201ENST00000556401 297 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 MIR3908-201ENST00000579798 126 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 MIR6857-201ENST00000613267 93 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 AC068792.1-201ENST00000621354 417 ntBASIC0.67□□□□□ -2.3
VCX3AQ9NNX9 Y_RNA.123-201ENST00000363338 102 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 Y_RNA.201-201ENST00000364052 96 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 SNORA72.3-201ENST00000365074 132 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU6-517P-201ENST00000384362 110 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 MIR660-201ENST00000385235 97 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 MT-TH-201ENST00000387441 69 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AL355796.1-201ENST00000406706 323 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU6-1186P-201ENST00000410429 97 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 MTND4P32-201ENST00000437189 1237 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU7-180P-201ENST00000459240 63 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 snoU13.26-201ENST00000459452 105 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AF186996.7-201ENST00000492781 209 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 CCDC34P1-201ENST00000507441 517 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU6-322P-201ENST00000516010 103 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU6-415P-201ENST00000516252 97 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 RNU1-117P-201ENST00000517041 158 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 CBX3P8-201ENST00000532412 525 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AL158827.2-201ENST00000602494 330 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 SNRPGP20-201ENST00000604477 205 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC073349.3-201ENST00000617616 186 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC091895.1-201ENST00000624494 256 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AC008873.1-201ENST00000625051 138 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 SCARNA4-201ENST00000629045 128 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 AL691447.3-201ENST00000635020 330 ntBASIC0.66□□□□□ -2.3
VCX3AQ9NNX9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RNA5SP361-201ENST00000362686 118 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RNU6-1317P-201ENST00000364582 104 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RNY3P10-201ENST00000384764 102 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR200A-201ENST00000384875 90 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR653-201ENST00000385279 96 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RNA5SP219-201ENST00000390940 113 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 SNORA26.8-201ENST00000391306 124 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR942-201ENST00000401111 86 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR450B-201ENST00000401182 78 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AL034345.1-201ENST00000407768 123 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR1289-2-201ENST00000408360 111 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RNA5SP504-201ENST00000410676 117 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 CDK8P2-201ENST00000415020 547 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 RPS26P5-201ENST00000418544 335 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MTND2P18-201ENST00000419962 1030 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC008134.1-201ENST00000420943 193 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MTCYBP8-201ENST00000422855 651 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AL365203.2-201ENST00000423444 196 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MTCO2P11-201ENST00000431069 680 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC244505.5-201ENST00000443639 207 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 MIR3913-1-201ENST00000577744 102 ntBASIC0.65□□□□□ -2.31
VCX3AQ9NNX9 AC008536.2-201ENST00000607284 349 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms