Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 SNORD56.3-201ENST00000363507 71 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 RNU6-1305P-201ENST00000364353 104 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 SNORA20.1-201ENST00000364790 130 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 SNORD87-201ENST00000364849 89 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 RNU6-514P-201ENST00000384208 107 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 SNORA9-201ENST00000384215 133 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 MIR95-201ENST00000385072 81 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 SNORA48.11-201ENST00000517015 89 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 MIR3117-201ENST00000584034 78 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AC023043.3-201ENST00000593113 385 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AL355297.2-201ENST00000604792 129 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AC127459.3-201ENST00000624328 466 ntBASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.12□□□□□ -1.91
TRIM39Q9HCM9 AC008264.2-201ENST00000610193 3731 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.352-201ENST00000365439 102 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RNU6-326P-201ENST00000365480 107 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RNU6-102P-201ENST00000384485 104 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 SNORD15B-201ENST00000384714 146 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.569-201ENST00000384749 103 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 MIR491-201ENST00000384877 84 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AL357139.1-201ENST00000407792 426 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RN7SKP123-201ENST00000410732 291 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RNU2-32P-201ENST00000411193 191 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 POLR2KP2-201ENST00000438155 177 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 MIR449C-201ENST00000516047 92 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RNU6-1023P-201ENST00000516137 106 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 RNU2-31P-201ENST00000516954 155 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AC109329.2-201ENST00000519658 482 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AC022616.8-201ENST00000533569 253 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 UBL5P2-201ENST00000583788 219 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AC091932.3-201ENST00000624223 323 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 IGHVIII-44-202ENST00000636235 289 ntBASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TRIM39Q9HCM9 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC092593.1-201ENST00000515413 1815 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNA5SP374-201ENST00000362939 125 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU6-379P-201ENST00000363813 104 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 SNORA51.4-201ENST00000364993 124 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU6-438P-201ENST00000365561 103 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.552-201ENST00000384665 112 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 MIR627-201ENST00000384979 97 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU6-220P-201ENST00000390919 107 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 ARL5AP4-201ENST00000430731 512 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC108059.2-201ENST00000434626 151 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 SERF1AP1-201ENST00000514575 187 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU1-143P-201ENST00000516296 146 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU6-155P-201ENST00000516347 100 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 SCARNA24.2-201ENST00000516968 130 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC012433.1-201ENST00000588916 398 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AC008749.1-201ENST00000597650 306 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AL109918.3-201ENST00000603072 338 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 U1.23-201ENST00000610293 146 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RNU1-68P-201ENST00000615382 146 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 AL590240.4-201ENST00000616908 390 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 U1.39-201ENST00000621562 146 ntBASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.1□□□□□ -1.91
TRIM39Q9HCM9 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 SNORA25.1-201ENST00000362326 128 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.16-201ENST00000362421 102 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 Y_RNA.416-201ENST00000384014 113 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 SNORA67.2-201ENST00000384300 149 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 MIR561-201ENST00000385216 97 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 AL031121.1-201ENST00000406553 254 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 MIR1283-1-201ENST00000408494 87 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 RNA5SP504-201ENST00000410676 117 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 RPL23AP83-201ENST00000434984 473 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 RPS29P2-201ENST00000479278 136 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 HMGB3P17-201ENST00000504195 649 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 RNU6-794P-201ENST00000517261 64 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 AC245166.1-201ENST00000521012 253 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 AC007536.1-201ENST00000533382 349 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 MIR3128-201ENST00000581957 66 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 MIR3668-201ENST00000582138 75 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 AC090425.1-201ENST00000610007 140 ntBASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
TRIM39Q9HCM9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TRIM39Q9HCM9 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms