Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.79□□□□□ -2.28
USP42Q9H9J4 RNU6-759P-201ENST00000516740 103 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 RNU6-856P-201ENST00000516959 98 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC106038.2-201ENST00000520706 568 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 MIR4753-201ENST00000585119 83 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC011458.1-201ENST00000604034 617 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AP001836.1-201ENST00000604675 523 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC064872.1-201ENST00000604823 1072 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AL356157.2-201ENST00000605122 111 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC005520.5-201ENST00000613926 164 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.79□□□□□ -2.28
USP42Q9H9J4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
USP42Q9H9J4 ELL2P3-201ENST00000457883 1602 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 SNORA33-201ENST00000363664 130 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 RNU6-266P-201ENST00000364225 107 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 AL031577.2-201ENST00000404133 280 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
USP42Q9H9J4 AC009094.1-201ENST00000564443 426 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 AC009229.3-201ENST00000608056 282 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 MIR8087-201ENST00000612745 78 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 AL050303.3-201ENST00000613704 284 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 AL109933.3-201ENST00000619095 188 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.78□□□□□ -2.28
USP42Q9H9J4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.78□□□□□ -2.28
USP42Q9H9J4 MIR338-201ENST00000636369 67 ntBASIC0.78□□□□□ -2.28
USP42Q9H9J4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.77□□□□□ -2.29
USP42Q9H9J4 RNU6-1097P-201ENST00000363586 107 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 RNU6-553P-201ENST00000364047 96 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 RNU4-48P-201ENST00000365559 182 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 Y_RNA.480-201ENST00000384364 102 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 RNU6-434P-201ENST00000384376 107 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 SNORA40.3-201ENST00000390964 122 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.77□□□□□ -2.29
USP42Q9H9J4 SCARNA18-201ENST00000459004 134 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 PSMC1P5-201ENST00000512850 177 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.77□□□□□ -2.29
USP42Q9H9J4 MIR4742-201ENST00000581069 85 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 AC022960.3-201ENST00000619794 441 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 AL391516.1-201ENST00000554380 2449 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 BX322639.1-202ENST00000423987 2213 ntBASIC0.77□□□□□ -2.29
USP42Q9H9J4 SNORA72.2-201ENST00000365028 127 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 RNU6-910P-201ENST00000390844 107 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 RNA5SP323-201ENST00000391094 133 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.76□□□□□ -2.29
USP42Q9H9J4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC016717.1-201ENST00000448918 286 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC105313.1-201ENST00000509121 353 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 RPL39P5-202ENST00000512505 151 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.76□□□□□ -2.29
USP42Q9H9J4 MIR5583-1-201ENST00000580941 59 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 MIR3682-201ENST00000581338 84 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 RSL24D1P11-201ENST00000591045 491 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC234772.3-201ENST00000602277 528 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC068790.6-201ENST00000602558 258 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC006566.1-201ENST00000608943 513 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AP001506.1-201ENST00000615444 211 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 AC079248.2-201ENST00000623779 326 ntBASIC0.76□□□□□ -2.29
USP42Q9H9J4 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
USP42Q9H9J4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
USP42Q9H9J4 RNU6-1123P-201ENST00000362347 106 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 RNU4-21P-201ENST00000362802 126 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 RNU6-248P-201ENST00000410720 107 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.75□□□□□ -2.29
USP42Q9H9J4 BX295541.1-201ENST00000417774 250 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AC013410.2-201ENST00000422627 201 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AC012306.1-201ENST00000423267 114 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AC010154.1-201ENST00000425857 269 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 HMGN2P34-201ENST00000437647 269 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.75□□□□□ -2.29
USP42Q9H9J4 AL033528.1-201ENST00000453780 140 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 SNORA31.2-201ENST00000516019 134 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 RNU6-232P-201ENST00000517144 64 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AC060788.1-201ENST00000521318 469 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AL929325.1-201ENST00000603096 117 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AC064807.4-201ENST00000607201 407 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 AL353149.1-201ENST00000610667 244 ntBASIC0.75□□□□□ -2.29
USP42Q9H9J4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
USP42Q9H9J4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
USP42Q9H9J4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
USP42Q9H9J4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
USP42Q9H9J4 Y_RNA.251-201ENST00000364551 99 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 RNU1-36P-201ENST00000365130 165 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 Y_RNA.399-201ENST00000383955 105 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 RNU6-417P-201ENST00000384712 107 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 RNA5SP109-201ENST00000391010 116 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 MIR300-201ENST00000401138 83 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 MIR1253-201ENST00000408273 105 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 MIR1283-1-201ENST00000408494 87 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.74□□□□□ -2.29
USP42Q9H9J4 AL606490.4-201ENST00000423117 127 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 snoU13.6-201ENST00000458785 104 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 SNORD124-201ENST00000459577 104 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 SNORD42A-201ENST00000459584 64 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.74□□□□□ -2.29
USP42Q9H9J4 RNU6-165P-201ENST00000517170 99 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 RNU6-323P-201ENST00000521915 107 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms